Detailed information NTG0370284

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FJQ89_RS22780
• Genome accession: NZ_CP041185
• Coordinates: 5173939..5174808 (-)
• Length: 289 a.a.
• NCBI ID: WP_141172945.1
• Uniprot ID: A0A4Y6RNX3
• Organism: Janthinobacterium tructae strain SNU WT1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5168939..5179808

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FJQ89_RS22745 (FJQ89_22745)	-	5170157..5171038 (+)	882	WP_141171806.1	ATP-binding protein	-
FJQ89_RS22750 (FJQ89_22750)	-	5171035..5171457 (+)	423	WP_141171807.1	NUDIX domain-containing protein	-
FJQ89_RS22755 (FJQ89_22755)	-	5171578..5171787 (+)	210	WP_141171808.1	DNA-binding protein	-
FJQ89_RS22760 (FJQ89_22760)	-	5171794..5172216 (+)	423	WP_141171809.1	type II toxin-antitoxin system VapC family toxin	-
FJQ89_RS22765 (FJQ89_22765)	yacG	5172230..5172421 (-)	192	WP_034748814.1	DNA gyrase inhibitor YacG	-
FJQ89_RS22770 (FJQ89_22770)	zapD	5172440..5173195 (-)	756	WP_141171810.1	cell division protein ZapD	-
FJQ89_RS22775 (FJQ89_22775)	coaE	5173279..5173905 (-)	627	WP_141171811.1	dephospho-CoA kinase	-
FJQ89_RS22780 (FJQ89_22780)	pilD	5173939..5174808 (-)	870	WP_141172945.1	A24 family peptidase	Machinery gene
FJQ89_RS22785 (FJQ89_22785)	-	5174915..5176111 (-)	1197	WP_141171812.1	type II secretion system F family protein	-
FJQ89_RS22790 (FJQ89_22790)	-	5176185..5177657 (-)	1473	WP_205704521.1	DHA2 family efflux MFS transporter permease subunit	-
FJQ89_RS22795 (FJQ89_22795)	-	5177865..5179019 (+)	1155	WP_141171813.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 30980.72 Da
• Isoelectric Point: 7.7410

>NTDB_id=370284 FJQ89_RS22780 WP_141172945.1 5173939..5174808(-) (pilD) [Janthinobacterium tructae strain SNU WT1]
MLQDTLLFAAPGNLPVALVAALFGLIVGSFLNVVIHRVPKMMQRESDNYVAEESGQPLPHTDRYNLMLPHSNCTACGHRI
TAMENIPVISYLLLRGKCSACKAPISARYPLVELLTGALSALLIWHFGSGWTGLATLVFAWLLIAMTFIDADTQMLPDDL
TFPLLWAGLLVNINGTFVPLQDAVIGAAAGYLALWAVYWAFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSLV
GAVVGIGLIVFARRGRDKPIPFGPYLAAAGLIALLYGAPLSRLTQGLTG

Nucleotide

• Length: 870 bp

>NTDB_id=370284 FJQ89_RS22780 WP_141172945.1 5173939..5174808(-) (pilD) [Janthinobacterium tructae strain SNU WT1]
ATGCTGCAAGATACCCTGCTGTTCGCCGCTCCCGGCAATTTGCCCGTCGCCCTCGTCGCCGCCCTGTTCGGCCTGATCGT
CGGCAGTTTCCTCAACGTGGTGATCCACCGCGTACCGAAAATGATGCAGCGCGAATCCGATAATTATGTGGCGGAAGAAA
GCGGCCAGCCCTTGCCGCATACGGACCGCTACAACCTGATGCTGCCGCATTCGAACTGCACCGCTTGCGGCCACCGCATC
ACGGCCATGGAAAACATCCCCGTCATCAGTTACCTGCTGCTGCGCGGCAAGTGCAGCGCCTGCAAGGCCCCCATCTCGGC
GCGCTATCCGCTGGTCGAGCTGCTGACGGGCGCGCTGTCGGCCCTGTTGATCTGGCACTTCGGCAGCGGCTGGACGGGCC
TGGCCACGCTCGTGTTTGCCTGGCTGCTGATCGCCATGACCTTCATCGATGCCGACACGCAAATGCTGCCCGACGACCTG
ACCTTCCCCCTGCTGTGGGCAGGTCTTCTGGTCAACATCAATGGCACCTTCGTGCCCCTGCAGGACGCCGTCATCGGCGC
GGCCGCTGGCTACCTGGCGCTGTGGGCCGTGTACTGGGCCTTCAAGCTGGCGACAGGCAAGGAGGGAATGGGCTATGGTG
ACTTCAAATTGCTGGCGGCGCTCGGTGCCTGGCTGGGCTGGACCATGCTGCCGACCATCATATTGTTGTCGTCGCTGGTC
GGCGCCGTGGTCGGCATCGGCCTGATCGTCTTCGCCAGGCGCGGGCGCGACAAACCGATTCCGTTCGGCCCCTACCTGGC
GGCGGCGGGCCTGATAGCGCTGCTGTACGGCGCGCCCCTGTCGCGCCTCACGCAGGGTCTGACCGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

3D structure

• AlphaFold DB: A0A4Y6RNX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.636	95.156	0.529
pilD	Vibrio campbellii strain DS40M4	55.939	90.311	0.505
pilD	Acinetobacter baumannii D1279779	47.038	99.308	0.467
pilD	Neisseria gonorrhoeae MS11	52.344	88.581	0.464
pilD	Acinetobacter nosocomialis M2	45.993	99.308	0.457