Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   FJQ89_RS07775 Genome accession   NZ_CP041185
Coordinates   1752250..1754673 (-) Length   807 a.a.
NCBI ID   WP_141169749.1    Uniprot ID   -
Organism   Janthinobacterium tructae strain SNU WT1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1747250..1759673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ89_RS07745 (FJQ89_07745) dcd 1747306..1747875 (-) 570 WP_071076830.1 dCTP deaminase -
  FJQ89_RS07750 (FJQ89_07750) - 1748009..1748809 (-) 801 WP_141169745.1 alpha/beta hydrolase -
  FJQ89_RS07755 (FJQ89_07755) - 1748868..1749575 (-) 708 WP_141169746.1 HAD family phosphatase -
  FJQ89_RS07760 (FJQ89_07760) - 1749596..1750357 (-) 762 WP_034756294.1 TSUP family transporter -
  FJQ89_RS07765 (FJQ89_07765) - 1750509..1751456 (+) 948 WP_141169747.1 LysR family transcriptional regulator -
  FJQ89_RS07770 (FJQ89_07770) - 1751492..1751920 (-) 429 WP_141169748.1 hypothetical protein -
  FJQ89_RS07775 (FJQ89_07775) comA 1752250..1754673 (-) 2424 WP_141169749.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FJQ89_RS07780 (FJQ89_07780) - 1755042..1755260 (+) 219 WP_141169750.1 hypothetical protein -
  FJQ89_RS07785 (FJQ89_07785) - 1755423..1756706 (+) 1284 WP_141169751.1 hypothetical protein -
  FJQ89_RS07790 (FJQ89_07790) - 1756761..1758749 (+) 1989 WP_141169752.1 helicase-related protein -
  FJQ89_RS07795 (FJQ89_07795) - 1758753..1759226 (-) 474 WP_168208396.1 T6SS effector amidase Tae4 family protein -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 87201.68 Da        Isoelectric Point: 10.1068

>NTDB_id=370267 FJQ89_RS07775 WP_141169749.1 1752250..1754673(-) (comA) [Janthinobacterium tructae strain SNU WT1]
MRTLILGFAAGAAWLQTQASLPPHAGVLLWLIAGSGFTVSLALHRHARWRCVVALAAGVGLGFYWAAWLAQAALAPQLAL
ADEGQDITVTGTIASLPYRFEQGVRFNFAVEKAVGAQVPPLIALSWYAGFRDAVTNEVGDVQPGERWRLTVRLQRPHGNA
NPMGFDYEAWLLEQGVRATGYVRPQPRADTPNVRLASFVPGFGNVVEASRAALRARILRSLDGKQYAGVIVALVVGDQRA
IPQSDWQVFNRTGVSHLISISGLHITMIAGLFALGAGALWRRSFFTERQLPLLLPAQKVAALAGALAAFVYVLLAGFGVP
AQRTLYMLLVVALALWLGRITSIGHILCLALGVVVLLDPWAVLWPGFWLSFGAVATMLYATAGRTTASLPQSAGRWRRLR
AAVALGAHTQYVVTVGLVPLTMLLFSQVSLLSPVANALAIPVISLLVTPLSLAGSLLPAPLCDWLLLLAHAIVQMLAQVL
DWLGARRFAVWTAPAPPMWSFCWALFGTAWLLAPRGWPHRWAGMLGWLPLLTALPSSPPAGQMWITAFDVGQGMAMLVET
HGHRLLYDTGPAYSLDSDGASRVIVPYLRARGIARLDGVIISHSDLDHAGGAVSLLENIDVGWLASSLFDGHPAVEARRQ
ARRPYLHCMAGQRWSWEGVHFAMLHPLPASHTDIALKPNARSCTVKITAGKHAILLAGDIEAAQEAQLLARSVAGELAAD
VLLAPHHGSGTSSTQAFLNAVDPGLAIFQVGHRNRYKHPKAQVYARYGEMGIVRLRTDVEGAVVLVFGEEIDVLRYRLGR
PRYLHGR

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=370267 FJQ89_RS07775 WP_141169749.1 1752250..1754673(-) (comA) [Janthinobacterium tructae strain SNU WT1]
ATGCGCACCCTGATACTCGGCTTTGCAGCCGGCGCCGCCTGGTTGCAAACGCAGGCAAGTTTGCCGCCCCATGCTGGCGT
GCTGCTGTGGCTGATCGCTGGCTCAGGGTTCACGGTTAGTCTGGCGCTGCACCGCCACGCGCGCTGGCGCTGCGTTGTTG
CGCTTGCCGCTGGCGTGGGATTGGGCTTTTATTGGGCCGCCTGGCTGGCCCAGGCCGCGCTGGCCCCGCAGCTGGCGCTG
GCCGACGAAGGGCAGGATATCACCGTGACGGGCACCATCGCCAGCCTGCCATACCGTTTCGAGCAGGGCGTGCGCTTCAA
TTTTGCCGTGGAAAAGGCGGTTGGCGCGCAGGTGCCGCCCCTGATCGCCCTGTCCTGGTACGCGGGTTTCCGCGATGCCG
TGACGAACGAGGTGGGCGACGTGCAGCCGGGCGAGCGCTGGCGCCTGACGGTGCGCTTGCAGCGTCCACATGGCAACGCG
AATCCCATGGGCTTTGACTACGAGGCGTGGCTGCTGGAGCAGGGCGTGCGCGCCACGGGCTATGTACGGCCGCAGCCGCG
CGCCGATACGCCGAACGTGCGTCTGGCGAGCTTTGTGCCCGGCTTCGGCAACGTGGTGGAGGCCAGCCGCGCGGCGTTGC
GCGCGCGCATCTTGCGCAGCCTGGACGGAAAACAGTATGCGGGCGTGATCGTGGCGCTGGTGGTGGGCGACCAGCGCGCC
ATTCCCCAGTCGGACTGGCAAGTGTTCAACCGCACGGGCGTGAGCCATTTGATTTCGATTTCCGGCTTGCACATTACGAT
GATCGCGGGCCTGTTCGCCCTGGGCGCAGGTGCGCTGTGGCGGCGCTCGTTTTTCACGGAGCGGCAACTGCCTTTGCTGC
TGCCGGCGCAAAAAGTGGCGGCCCTGGCCGGCGCACTGGCGGCATTTGTGTATGTGCTGCTGGCCGGTTTTGGCGTGCCC
GCGCAGCGCACTTTATACATGTTGCTGGTGGTGGCGCTGGCCTTGTGGCTCGGGCGCATCACCAGCATCGGCCATATCCT
GTGCCTGGCGCTGGGTGTGGTGGTGCTGCTCGACCCGTGGGCCGTGCTATGGCCCGGTTTCTGGCTGTCGTTCGGCGCCG
TCGCCACCATGCTGTACGCGACGGCGGGCCGCACCACAGCGTCCTTGCCGCAGAGCGCCGGGCGCTGGCGCCGTTTGCGC
GCCGCCGTGGCGCTGGGTGCCCACACGCAATACGTGGTGACGGTGGGGCTGGTGCCCTTGACGATGCTGCTGTTCTCGCA
AGTGTCATTGCTCAGCCCCGTGGCCAATGCGCTGGCCATTCCCGTCATCAGCCTGCTCGTCACGCCATTGTCCCTGGCCG
GTAGCCTGCTGCCGGCGCCCTTGTGCGACTGGCTGTTGCTGCTGGCACACGCCATCGTGCAGATGCTGGCGCAGGTACTG
GACTGGCTGGGTGCGCGCCGTTTTGCCGTGTGGACGGCGCCCGCGCCGCCTATGTGGAGTTTTTGCTGGGCATTGTTTGG
CACGGCATGGCTGCTGGCGCCACGCGGATGGCCGCATCGCTGGGCGGGCATGCTGGGCTGGCTGCCGCTGCTGACGGCCT
TGCCGTCCAGCCCGCCAGCTGGCCAGATGTGGATCACGGCCTTTGACGTGGGACAAGGCATGGCCATGCTGGTGGAAACG
CACGGGCACCGCTTGTTGTACGACACGGGACCCGCCTACAGCCTCGACTCCGATGGCGCCAGCCGGGTCATCGTGCCTTA
CTTGCGCGCACGCGGCATAGCCAGGCTCGACGGCGTGATCATTTCCCACAGCGACCTCGATCACGCGGGCGGCGCCGTAT
CCTTGCTGGAAAACATAGACGTAGGCTGGCTGGCCTCGTCGTTGTTCGACGGCCACCCGGCCGTCGAGGCCCGGCGGCAA
GCCCGGCGTCCGTATCTGCACTGCATGGCGGGCCAGCGCTGGAGCTGGGAAGGCGTGCACTTCGCCATGCTGCACCCATT
GCCCGCCAGCCACACGGACATTGCACTGAAACCGAACGCCCGCAGCTGCACCGTGAAAATCACGGCAGGCAAGCATGCGA
TCCTGCTGGCCGGTGATATTGAAGCGGCGCAGGAAGCGCAATTGCTGGCGCGCTCGGTGGCGGGCGAACTGGCCGCCGAC
GTATTGCTGGCACCGCACCACGGCAGTGGTACTTCGTCGACACAGGCATTCTTGAACGCCGTCGATCCCGGTCTGGCGAT
TTTCCAGGTCGGGCACAGGAATCGCTATAAACATCCGAAGGCGCAGGTGTATGCGCGCTATGGCGAGATGGGAATCGTGC
GGCTGCGCACCGATGTGGAAGGGGCGGTGGTGCTGGTGTTTGGCGAGGAGATTGATGTGCTGCGGTATCGGCTTGGCCGG
CCACGGTATTTGCACGGTCGGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(233-516)

Metallo-beta-lactamase superfamily (Lactamase_B)

(550-752)

Domain of unknown function (DUF4131) (DUF4131)

(26-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.199

100

0.491

Multiple sequence alignment