Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FJR47_RS01725 Genome accession   NZ_CP041166
Coordinates   313444..315246 (-) Length   600 a.a.
NCBI ID   WP_152298767.1    Uniprot ID   A0AAJ4A2I2
Organism   Sulfurimonas xiamenensis strain 1-1N     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 308444..320246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJR47_RS01715 (FJR47_01715) - 308792..311887 (-) 3096 WP_152298765.1 ATP-binding protein -
  FJR47_RS01720 (FJR47_01720) - 311887..313383 (-) 1497 WP_152298766.1 Hpt domain-containing protein -
  FJR47_RS01725 (FJR47_01725) uvrC 313444..315246 (-) 1803 WP_152298767.1 excinuclease ABC subunit UvrC Machinery gene
  FJR47_RS01730 (FJR47_01730) - 315236..315598 (-) 363 WP_241690956.1 hypothetical protein -
  FJR47_RS01735 (FJR47_01735) - 315656..315844 (+) 189 WP_188093771.1 hypothetical protein -
  FJR47_RS01740 (FJR47_01740) nadB 315841..317289 (+) 1449 WP_152298769.1 L-aspartate oxidase -
  FJR47_RS01745 (FJR47_01745) guaA 317449..318999 (+) 1551 WP_152298770.1 glutamine-hydrolyzing GMP synthase -
  FJR47_RS01750 (FJR47_01750) - 319011..319649 (+) 639 WP_152298771.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69111.04 Da        Isoelectric Point: 9.6292

>NTDB_id=370054 FJR47_RS01725 WP_152298767.1 313444..315246(-) (uvrC) [Sulfurimonas xiamenensis strain 1-1N]
MNLEETIKQLPDCAGIYQYFDKEGHLLYVGKAKSLAKRVKSYFIFTPSLKPNTNLSSRIKKMISQAVSMNYIVVNSEHDA
LILENSLIKQLNPKYNILLRDDKTYPYIYIDNAKEYPRFEITRKIIQSSNVTYYGPFSVGARDILDSIYDICRLVQKKGS
LKSKKLCLYYQIGKCLGPCELNVPYEEYKKELDLATELIKNKKTLLAKLEEKMHFYAQNLRFEEAGEIRDRYQRISRSEI
KSEIDFASDENYDIFVLKNAENRAVIVRIFMRGGKIISSSHDYIQLNEGYDEDELYQRALMDFYSNGKPPIIAPILIATE
FENKNIIEEYLTTLFEKKALIKVPKKGDKKKLIDLALINAQELLRKEGKQNSDAILSEVKELFSLEKIPKRVEIFDNSHM
SGVATVGAMAVYDKGGFDKKSYRTYHLQAKDEYSQMRETLTKRVESFSKNSPPDLWIIDGGGTLLKLAFEILESNGVFLD
VIAISKEKIDAKAHRAKGKAKDIIHTKEDVFRLKDSDKRLQWMQKLRDEAHRSAINFHKKTKLKLDKESKLLSLKGISQA
KIVKLINHFGTFEALKNLSVEEIGSVLNIKDANIIKSIYK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=370054 FJR47_RS01725 WP_152298767.1 313444..315246(-) (uvrC) [Sulfurimonas xiamenensis strain 1-1N]
ATGAATCTTGAGGAAACTATAAAACAACTGCCCGATTGTGCCGGAATATACCAATATTTTGATAAAGAGGGACATCTTCT
TTATGTAGGCAAAGCAAAAAGTTTAGCAAAAAGAGTAAAAAGTTATTTTATTTTCACCCCTTCTCTAAAACCAAATACAA
ATCTCTCAAGCAGAATCAAAAAGATGATTTCTCAAGCAGTTTCTATGAACTACATAGTTGTAAATTCAGAGCATGACGCT
TTAATTTTAGAAAATTCACTTATCAAGCAGCTTAATCCCAAATATAATATTTTACTAAGAGATGACAAAACTTACCCCTA
TATTTACATAGACAACGCAAAAGAGTATCCAAGATTTGAAATAACAAGAAAAATCATACAATCTTCAAATGTTACATATT
ATGGTCCCTTTTCCGTCGGTGCAAGAGATATCTTAGACTCAATTTATGATATATGCCGTCTTGTACAAAAAAAAGGATCT
CTAAAATCAAAAAAACTCTGCCTTTACTATCAAATAGGCAAATGTCTTGGACCGTGTGAATTAAATGTTCCATATGAAGA
GTATAAAAAAGAGCTTGATTTGGCTACAGAACTGATAAAAAACAAGAAAACACTTCTGGCAAAACTAGAAGAAAAGATGC
ACTTTTATGCCCAAAATCTTCGATTTGAAGAGGCAGGTGAAATTAGAGACAGATATCAAAGAATAAGCCGTTCAGAGATA
AAGAGTGAAATTGATTTTGCCAGTGATGAAAATTACGATATTTTTGTTCTAAAAAATGCTGAAAACAGAGCAGTAATAGT
AAGAATATTTATGAGAGGAGGCAAAATCATCTCATCTTCGCATGATTATATCCAGCTCAATGAAGGATATGATGAAGATG
AACTCTACCAAAGAGCTCTAATGGATTTTTACTCAAATGGAAAACCTCCGATTATAGCGCCGATACTGATTGCTACTGAA
TTTGAAAATAAAAATATCATAGAAGAGTATCTTACTACTCTCTTTGAGAAAAAAGCGCTTATAAAAGTACCTAAAAAGGG
GGATAAAAAGAAACTTATTGATTTGGCTTTGATAAATGCGCAGGAACTTTTAAGAAAAGAGGGCAAACAAAACAGCGATG
CGATCTTAAGTGAAGTAAAAGAGTTGTTTTCTTTAGAAAAAATTCCTAAGCGCGTAGAGATTTTTGACAACTCTCATATG
TCAGGAGTTGCAACAGTCGGAGCTATGGCGGTATATGATAAAGGAGGTTTTGATAAAAAAAGTTACAGAACCTATCATCT
GCAGGCAAAAGACGAGTACTCTCAAATGAGAGAGACACTTACAAAAAGAGTAGAGAGCTTTTCCAAAAACTCTCCTCCAG
ATTTATGGATTATTGATGGAGGAGGCACACTCTTAAAACTTGCTTTTGAAATTTTAGAATCAAATGGAGTTTTTTTGGAT
GTCATCGCAATATCAAAAGAGAAGATAGATGCAAAAGCACATCGAGCAAAAGGAAAAGCAAAGGACATAATTCATACAAA
AGAGGATGTTTTTAGGCTTAAAGACAGCGATAAAAGACTTCAATGGATGCAAAAATTAAGAGATGAAGCACATAGAAGCG
CAATAAACTTTCATAAAAAAACAAAACTAAAACTTGATAAAGAGAGCAAACTCTTAAGCCTAAAAGGGATATCACAGGCA
AAAATAGTTAAACTAATAAACCATTTTGGAACATTTGAAGCGCTTAAGAACCTAAGTGTTGAGGAGATTGGTTCTGTTTT
AAACATAAAAGATGCAAATATAATAAAAAGTATTTATAAATAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-535)

GIY-YIG catalytic domain (GIY-YIG)

(14-96)

UvrB/uvrC motif (UVR)

(203-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.02

98

0.5

Multiple sequence alignment