Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   FJR47_RS01315 Genome accession   NZ_CP041166
Coordinates   229137..229388 (+) Length   83 a.a.
NCBI ID   WP_152298695.1    Uniprot ID   -
Organism   Sulfurimonas xiamenensis strain 1-1N     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 224137..234388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJR47_RS01290 (FJR47_01290) - 224904..225278 (+) 375 WP_152298690.1 (2Fe-2S) ferredoxin domain-containing protein -
  FJR47_RS01295 (FJR47_01295) panD 225280..225645 (+) 366 WP_152298691.1 aspartate 1-decarboxylase -
  FJR47_RS01300 (FJR47_01300) - 225646..225954 (+) 309 WP_152298692.1 YbaB/EbfC family nucleoid-associated protein -
  FJR47_RS01305 (FJR47_01305) - 226105..226953 (+) 849 WP_152298693.1 polyprenyl synthetase family protein -
  FJR47_RS01310 (FJR47_01310) tkt 227020..228939 (+) 1920 WP_152298694.1 transketolase -
  FJR47_RS01315 (FJR47_01315) Cj0011c 229137..229388 (+) 252 WP_152298695.1 helix-hairpin-helix domain-containing protein Machinery gene
  FJR47_RS01320 (FJR47_01320) - 229425..230102 (-) 678 WP_152298696.1 endonuclease III domain-containing protein -
  FJR47_RS01325 (FJR47_01325) - 230099..231007 (-) 909 WP_152298697.1 AEC family transporter -
  FJR47_RS01330 (FJR47_01330) - 231061..231381 (+) 321 WP_152298698.1 thioredoxin family protein -
  FJR47_RS01335 (FJR47_01335) - 231383..232132 (-) 750 WP_152298699.1 RNA methyltransferase -

Sequence

Protein


Download         Length: 83 a.a.        Molecular weight: 9159.77 Da        Isoelectric Point: 9.2454

>NTDB_id=370053 FJR47_RS01315 WP_152298695.1 229137..229388(+) (Cj0011c) [Sulfurimonas xiamenensis strain 1-1N]
MKLLSLLIIGAALCFGAVDINKADKDELMNINGVGEAKASAIIEYRKKHNCFSSIEELKEVKGFGDKMLEKNRNNITASK
CKK

Nucleotide


Download         Length: 252 bp        

>NTDB_id=370053 FJR47_RS01315 WP_152298695.1 229137..229388(+) (Cj0011c) [Sulfurimonas xiamenensis strain 1-1N]
ATGAAGTTATTGTCACTACTGATTATTGGAGCTGCTCTATGTTTTGGAGCGGTAGATATTAACAAAGCAGATAAAGATGA
GCTGATGAACATAAACGGTGTCGGTGAAGCAAAAGCAAGCGCTATTATAGAGTACAGAAAAAAGCATAACTGTTTTAGCA
GTATTGAAGAGCTAAAAGAGGTCAAAGGCTTTGGCGATAAAATGTTAGAGAAAAACAGAAACAATATCACTGCAAGCAAG
TGTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.895

91.566

0.53
  comEA Lactococcus lactis subsp. cremoris KW2

51.667

72.289

0.373

Multiple sequence alignment