Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FJR03_RS09415 Genome accession   NZ_CP041165
Coordinates   1839967..1841766 (+) Length   599 a.a.
NCBI ID   WP_193113252.1    Uniprot ID   A0A7M1AWV2
Organism   Sulfurimonas marina strain B2     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1834967..1846766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJR03_RS09400 (FJR03_09360) nhaD 1836574..1837925 (-) 1352 Protein_1842 sodium:proton antiporter NhaD -
  FJR03_RS09405 (FJR03_09365) nadB 1837926..1839377 (-) 1452 WP_193113250.1 L-aspartate oxidase -
  FJR03_RS11765 - 1839378..1839506 (-) 129 WP_255524247.1 hypothetical protein -
  FJR03_RS09410 (FJR03_09370) - 1839528..1839977 (+) 450 WP_193113251.1 hypothetical protein -
  FJR03_RS09415 (FJR03_09375) uvrC 1839967..1841766 (+) 1800 WP_193113252.1 excinuclease ABC subunit UvrC Machinery gene
  FJR03_RS09420 (FJR03_09380) - 1841837..1842259 (+) 423 WP_193113253.1 PAS domain-containing protein -
  FJR03_RS09425 (FJR03_09385) - 1842262..1843920 (+) 1659 WP_193113254.1 Hpt domain-containing protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69210.89 Da        Isoelectric Point: 9.2229

>NTDB_id=370050 FJR03_RS09415 WP_193113252.1 1839967..1841766(+) (uvrC) [Sulfurimonas marina strain B2]
MDLKTTIKQLPTSPGIYQYFDKNGRLLYVGKAKNLANRVKSYWHFTPELRPNSTLSVRITKMLHQTVSLEYIVVNSEHDA
LILENSLIKQLHPKYNILLRDDKTYPYIYLDNSEKYPRLDITRKIINSKDITYFGPYSVGARDILNSVYNIAKLVQKKGC
LRSKKLCLYYQIDKCLGPCELPISKERYQEEVDLAVSLIKNKKLLIKKLQEKMEFYAEELRFEEAAELRDTIDKISRSEI
NSEIDFANNDNYDIFVVEHTELRAVLVKIFMRNGKIISSSHDYINLSEGFDANEIFTQALVDFYKDEKPPIVAPILLNME
FEDKELIEEHLSEVFEKKASISIPQRGKKKDLIALALLNAKELLKKQNSKNEKILQEVQELCSLERTPNRVEIFDNSHMA
GMATVGAMVVYENGKFDKKSYRTYHLEAKDEYAQMRETLTRRVESFAKNPAPDLWVLDGGSTLLKLALDILESNGVNIDV
IAISKEKIDAKAHRAKGKAKDIIYTKEETFRLQESDKRLQWIQNLRDEAHRSAITFHKKTKLKLDQESKLLSLHGISAAK
IQKLLNHFGTFENIKSASVEDLTTILNKKDAKNIKLLYK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=370050 FJR03_RS09415 WP_193113252.1 1839967..1841766(+) (uvrC) [Sulfurimonas marina strain B2]
ATGGATCTTAAAACTACGATCAAGCAACTCCCAACATCTCCCGGGATCTACCAATATTTCGATAAAAATGGCAGACTTTT
ATATGTTGGAAAAGCAAAAAACCTTGCAAACAGGGTAAAAAGTTATTGGCACTTTACCCCAGAACTACGCCCTAACTCGA
CACTCTCTGTTAGAATCACCAAGATGTTGCATCAAACGGTTTCACTAGAGTATATAGTGGTAAATTCTGAGCATGATGCA
TTGATCTTGGAAAACTCTTTGATCAAACAGCTCCATCCAAAATACAATATTCTTCTACGCGATGATAAAACATATCCATA
TATATATCTCGACAACTCTGAAAAATATCCTAGACTCGATATAACAAGAAAAATAATCAACTCCAAAGATATCACCTACT
TCGGTCCCTATTCCGTAGGTGCCAGAGATATTTTAAACTCAGTCTATAATATCGCTAAACTTGTACAAAAAAAGGGGTGC
CTACGTTCAAAAAAGTTGTGTCTTTATTACCAGATAGACAAATGTCTGGGCCCCTGTGAACTTCCAATTTCAAAAGAGCG
TTACCAAGAAGAGGTTGATCTTGCAGTTTCGCTTATAAAAAACAAAAAGCTTTTAATCAAAAAACTGCAAGAGAAAATGG
AATTTTATGCAGAAGAGCTTCGTTTTGAAGAAGCGGCAGAACTTCGAGATACGATAGATAAAATCTCCCGATCGGAAATC
AATTCCGAAATAGATTTTGCAAATAATGACAACTATGATATTTTCGTTGTAGAACATACTGAACTACGTGCAGTGCTTGT
AAAGATCTTTATGAGAAACGGAAAAATAATCTCCTCTTCCCATGACTACATTAATCTTTCTGAAGGATTTGATGCAAATG
AAATTTTCACGCAAGCTTTAGTAGACTTTTATAAAGATGAAAAACCCCCAATAGTAGCTCCTATTCTTCTCAATATGGAG
TTTGAAGACAAAGAGTTGATCGAAGAACACCTTAGTGAAGTTTTTGAGAAAAAAGCCTCTATCTCAATTCCACAACGCGG
GAAGAAAAAAGATCTTATTGCCCTAGCACTTTTAAATGCAAAAGAGCTACTCAAAAAACAAAACAGTAAAAACGAAAAAA
TTCTTCAAGAGGTACAAGAGTTGTGCAGCCTAGAGAGAACCCCCAACAGAGTGGAGATTTTTGACAACTCTCATATGGCA
GGCATGGCTACAGTTGGGGCTATGGTTGTCTATGAAAACGGCAAATTTGATAAAAAATCGTACAGAACTTACCATCTCGA
AGCAAAAGATGAATATGCTCAAATGAGAGAGACACTTACAAGAAGAGTTGAAAGTTTTGCTAAAAATCCGGCACCTGATC
TTTGGGTGCTCGATGGTGGTTCTACACTTTTAAAGTTAGCACTCGATATTTTAGAATCTAACGGTGTAAATATTGATGTG
ATCGCAATATCAAAAGAGAAAATTGATGCAAAAGCACACCGTGCAAAAGGGAAAGCAAAAGATATTATCTATACAAAAGA
GGAAACCTTTAGACTGCAAGAATCTGATAAAAGACTTCAATGGATTCAAAACTTAAGAGATGAAGCACACCGCTCGGCGA
TCACATTTCACAAGAAAACAAAACTTAAACTTGATCAAGAGAGTAAACTCTTAAGCTTACACGGGATTTCAGCCGCAAAA
ATCCAAAAATTGCTCAATCATTTCGGAACTTTTGAAAATATAAAAAGTGCTTCTGTAGAGGATTTAACGACAATTTTGAA
CAAAAAAGATGCAAAAAACATCAAATTACTTTATAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix domain (HHH_5)

(549-596)

UvrB/uvrC motif (UVR)

(205-236)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(379-534)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1AWV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.931

98.664

0.503

Multiple sequence alignment