Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   FI878_RS01725 Genome accession   NZ_CP041148
Coordinates   367972..368790 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain CUVET-MIC596     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 362972..373790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FI878_RS01690 (FI878_01710) - 363555..363684 (-) 130 Protein_324 hypothetical protein -
  FI878_RS01695 (FI878_01715) rpoZ 363723..364001 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  FI878_RS01700 (FI878_01720) gmk 364074..364703 (-) 630 WP_000015937.1 guanylate kinase -
  FI878_RS01705 (FI878_01725) ispH 364826..365776 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FI878_RS01710 (FI878_01730) fimU 365946..366419 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FI878_RS01715 (FI878_01735) pilV 366413..366973 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  FI878_RS01720 (FI878_01740) pilW 366974..367975 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  FI878_RS01725 (FI878_01745) pilX 367972..368790 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FI878_RS01730 (FI878_01750) pilY1 368802..372656 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  FI878_RS01735 (FI878_01755) pilY2 372669..373151 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  FI878_RS01740 (FI878_01760) pilE 373148..373573 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=369878 FI878_RS01725 WP_000149374.1 367972..368790(+) (pilX) [Acinetobacter baumannii strain CUVET-MIC596]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=369878 FI878_RS01725 WP_000149374.1 367972..368790(+) (pilX) [Acinetobacter baumannii strain CUVET-MIC596]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment