Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D073_RS14720 Genome accession   NZ_CP041145
Coordinates   2987148..2987792 (-) Length   214 a.a.
NCBI ID   WP_140983798.1    Uniprot ID   -
Organism   Bacillus velezensis strain At1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2982148..2992792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D073_RS14685 (D073_2776) - 2983333..2983764 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  D073_RS14690 (D073_2777) - 2983764..2984105 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  D073_RS14695 (D073_2778) - 2984098..2985579 (+) 1482 WP_041482464.1 Na+/H+ antiporter subunit D -
  D073_RS14700 (D073_2779) - 2985585..2986061 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  D073_RS14705 (D073_2780) - 2986061..2986345 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  D073_RS14710 (D073_2781) mnhG 2986329..2986703 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  D073_RS14715 (D073_2782) - 2986743..2987126 (-) 384 WP_007408674.1 hotdog fold thioesterase -
  D073_RS14720 (D073_2783) comA 2987148..2987792 (-) 645 WP_140983798.1 response regulator transcription factor Regulator
  D073_RS14725 (D073_2784) comP 2987873..2990224 (-) 2352 WP_020956269.1 sensor histidine kinase Regulator
  D073_RS14730 comX 2990202..2990372 (-) 171 WP_015418105.1 competence pheromone ComX -
  D073_RS14735 (D073_2785) - 2990369..2991298 (-) 930 WP_231945405.1 polyprenyl synthetase family protein -
  D073_RS14740 (D073_2786) degQ 2991429..2991569 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  D073_RS14750 (D073_2787) - 2992035..2992376 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24288.71 Da        Isoelectric Point: 4.9953

>NTDB_id=369844 D073_RS14720 WP_140983798.1 2987148..2987792(-) (comA) [Bacillus velezensis strain At1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLSTQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=369844 D073_RS14720 WP_140983798.1 2987148..2987792(-) (comA) [Bacillus velezensis strain At1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCTAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCTCAACGCAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.514

100

0.855

Multiple sequence alignment