Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   D073_RS11670 Genome accession   NZ_CP041145
Coordinates   2414050..2414487 (-) Length   145 a.a.
NCBI ID   WP_012117983.1    Uniprot ID   -
Organism   Bacillus velezensis strain At1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2409050..2419487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D073_RS11620 (D073_2203) sinI 2409434..2409607 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  D073_RS11625 (D073_2204) sinR 2409641..2409976 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  D073_RS11630 (D073_2205) tasA 2410024..2410809 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  D073_RS11635 (D073_2206) sipW 2410874..2411458 (-) 585 WP_015240205.1 signal peptidase I SipW -
  D073_RS11640 (D073_2207) tapA 2411430..2412101 (-) 672 WP_020956077.1 amyloid fiber anchoring/assembly protein TapA -
  D073_RS11645 (D073_2208) - 2412360..2412689 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  D073_RS11650 (D073_2209) - 2412729..2412908 (-) 180 WP_003153093.1 YqzE family protein -
  D073_RS11655 (D073_2210) comGG 2412965..2413342 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  D073_RS11660 (D073_2211) comGF 2413343..2413843 (-) 501 WP_260485564.1 competence type IV pilus minor pilin ComGF -
  D073_RS11665 (D073_2212) comGE 2413752..2414066 (-) 315 WP_041482453.1 competence type IV pilus minor pilin ComGE -
  D073_RS11670 (D073_2213) comGD 2414050..2414487 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  D073_RS11675 (D073_2214) comGC 2414477..2414743 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  D073_RS11680 (D073_2215) comGB 2414790..2415827 (-) 1038 WP_020956080.1 competence type IV pilus assembly protein ComGB Machinery gene
  D073_RS11685 (D073_2216) comGA 2415814..2416884 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  D073_RS11690 (D073_2217) - 2417076..2418026 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -
  D073_RS11695 (D073_2218) - 2418172..2419473 (+) 1302 WP_020956081.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16286.74 Da        Isoelectric Point: 10.2475

>NTDB_id=369828 D073_RS11670 WP_012117983.1 2414050..2414487(-) (comGD) [Bacillus velezensis strain At1]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPAYTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=369828 D073_RS11670 WP_012117983.1 2414050..2414487(-) (comGD) [Bacillus velezensis strain At1]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGTAGGATTGTCGAGCGTTCTTTTGATTCGCTTCACATTACACTTGTGACTTTACCTGAGAGTCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.849

100

0.572

Multiple sequence alignment