Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D069_RS02025 Genome accession   NZ_CP041143
Coordinates   397059..398012 (+) Length   317 a.a.
NCBI ID   WP_032872883.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5007     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 392059..403012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D069_RS02000 (D069_0388) - 392105..393532 (+) 1428 WP_181364943.1 HAMP domain-containing sensor histidine kinase -
  D069_RS02005 (D069_0389) rapC 393691..394839 (+) 1149 WP_029326229.1 Rap family tetratricopeptide repeat protein Regulator
  D069_RS02010 (D069_0390) phrC 394823..394942 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  D069_RS02015 - 395091..395201 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  D069_RS02020 (D069_0391) - 395281..396645 (-) 1365 WP_105938096.1 aspartate kinase -
  D069_RS02025 (D069_0392) ceuB 397059..398012 (+) 954 WP_032872883.1 ABC transporter permease Machinery gene
  D069_RS02030 (D069_0393) - 398002..398949 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  D069_RS02035 (D069_0394) - 398943..399701 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  D069_RS02040 (D069_0395) - 399723..400667 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  D069_RS02045 (D069_0396) - 400709..402133 (-) 1425 WP_045206774.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34931.21 Da        Isoelectric Point: 9.6741

>NTDB_id=369647 D069_RS02025 WP_032872883.1 397059..398012(+) (ceuB) [Bacillus velezensis strain UCMB5007]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSVATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=369647 D069_RS02025 WP_032872883.1 397059..398012(+) (ceuB) [Bacillus velezensis strain UCMB5007]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCCAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTGTTCATGAAAATCCTCGAGAGAATCAAGTTTAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGTTCAGTCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCGTCCTGGCTGCAGGGGGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATTGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCTAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment