Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   D069_RS02010 Genome accession   NZ_CP041143
Coordinates   394823..394942 (+) Length   39 a.a.
NCBI ID   WP_033575081.1    Uniprot ID   -
Organism   Bacillus velezensis strain UCMB5007     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 389823..399942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D069_RS01995 (D069_0387) - 391435..392118 (+) 684 WP_007609386.1 response regulator transcription factor -
  D069_RS02000 (D069_0388) - 392105..393532 (+) 1428 WP_181364943.1 HAMP domain-containing sensor histidine kinase -
  D069_RS02005 (D069_0389) rapC 393691..394839 (+) 1149 WP_029326229.1 Rap family tetratricopeptide repeat protein Regulator
  D069_RS02010 (D069_0390) phrC 394823..394942 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  D069_RS02015 - 395091..395201 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  D069_RS02020 (D069_0391) - 395281..396645 (-) 1365 WP_105938096.1 aspartate kinase -
  D069_RS02025 (D069_0392) ceuB 397059..398012 (+) 954 WP_032872883.1 ABC transporter permease Machinery gene
  D069_RS02030 (D069_0393) - 398002..398949 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  D069_RS02035 (D069_0394) - 398943..399701 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4214.93 Da        Isoelectric Point: 8.0284

>NTDB_id=369646 D069_RS02010 WP_033575081.1 394823..394942(+) (phrC) [Bacillus velezensis strain UCMB5007]
MKLKSKWFVICLAAAAIFTVTGAGQTDQADFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=369646 D069_RS02010 WP_033575081.1 394823..394942(+) (phrC) [Bacillus velezensis strain UCMB5007]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGAGCAGGCCAGACAGA
TCAGGCTGACTTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

72.5

100

0.744

Multiple sequence alignment