Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FY128_RS12220 Genome accession   NZ_CP048593
Coordinates   2542974..2543579 (-) Length   201 a.a.
NCBI ID   WP_003514308.1    Uniprot ID   A0A1V2AN75
Organism   Agrobacterium tumefaciens strain But001     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2537974..2548579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY128_RS12205 (FY128_12145) rimP 2539009..2539605 (-) 597 WP_003514299.1 ribosome maturation factor RimP -
  FY128_RS12210 (FY128_12150) - 2539893..2541521 (+) 1629 WP_076843882.1 MFS transporter -
  FY128_RS12215 (FY128_12155) - 2541612..2542850 (-) 1239 WP_416333430.1 lytic murein transglycosylase -
  FY128_RS12220 (FY128_12160) recR 2542974..2543579 (-) 606 WP_003514308.1 recombination mediator RecR Machinery gene
  FY128_RS12225 (FY128_12165) - 2543617..2544252 (+) 636 WP_186447900.1 MOSC domain-containing protein -
  FY128_RS12230 (FY128_12170) - 2544266..2544589 (-) 324 WP_003514318.1 YbaB/EbfC family nucleoid-associated protein -
  FY128_RS12235 (FY128_12175) - 2544617..2546494 (-) 1878 WP_113472985.1 DNA polymerase III subunit gamma/tau -
  FY128_RS12245 (FY128_12185) - 2546819..2547247 (+) 429 WP_162760790.1 HIT domain-containing protein -
  FY128_RS12250 (FY128_12190) nudC 2547247..2548209 (+) 963 WP_145166475.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21367.72 Da        Isoelectric Point: 6.3321

>NTDB_id=369630 FY128_RS12220 WP_003514308.1 2542974..2543579(-) (recR) [Agrobacterium tumefaciens strain But001]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTIDPCTVCADDRR
DQSVIIVVEDVSDLWALERAGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DRLADLGIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=369630 FY128_RS12220 WP_003514308.1 2542974..2543579(-) (recR) [Agrobacterium tumefaciens strain But001]
ATGGCAAAACGAGTCACCGGTCCCGAAATCGAAAAACTGATCCAGCTGCTTGCAAAAGTGCCGGGGCTTGGGCCCCGCTC
GGCGCGGCGGGCGGCGCTGCATCTCATCAAGAAGAAGGAACAGCTGCTTGGACCGCTGGGCCACGCGATGGGTGAAGCCT
ATGACAAGGTGAAGATCTGCTCGTGCTGCGGCAATGTCGATACCATCGATCCCTGCACGGTCTGCGCCGATGATAGACGT
GACCAGTCGGTCATCATCGTGGTGGAAGACGTGTCGGATCTGTGGGCGCTGGAGCGAGCAGGCGCCATGAATACCGCCTA
TCATGTGCTTGGTGGCACGCTGTCGCCGCTCGATGGCGTCGGGCCGGAAGATCTGAACATCAAGGGACTGATCGATCGCG
TCAGCGCCGGCGGTATTCGCGAGCTCATCATCGCCGTCAATGCGACGGTGGAGGGACAGGCAACAGCCCATTACATCACC
GATCGCCTGGCCGATCTCGGCATCAAGATCACCCGGCTTGCGCATGGCGTGCCTGTTGGCGGCGAGCTGGACTATCTCGA
CGAGGGCACATTGACGGCGGCGCTGCGCGCTCGCACAACGATCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(45-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2AN75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.907

96.517

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

45.833

95.522

0.438
  recR Streptococcus pneumoniae R6

39.062

95.522

0.373

Multiple sequence alignment