Detailed information NTG0369607

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: FY128_RS04300
• Genome accession: NZ_CP048593
• Coordinates: 872339..873616 (+)
• Length: 425 a.a.
• NCBI ID: WP_003512644.1
• Uniprot ID: A0A1B9V328
• Organism: Agrobacterium tumefaciens strain But001
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 867339..878616

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FY128_RS04280 (FY128_04255)	-	867946..868314 (+)	369	WP_113473845.1	cupin domain-containing protein	-
FY128_RS04285 (FY128_04260)	-	868373..869626 (-)	1254	WP_025593249.1	cytochrome P450	-
FY128_RS04290 (FY128_04265)	-	869712..870959 (-)	1248	WP_065688229.1	sensor domain-containing diguanylate cyclase	-
FY128_RS04295 (FY128_04270)	clpP	871415..872047 (+)	633	WP_111789280.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
FY128_RS04300 (FY128_04275)	clpX	872339..873616 (+)	1278	WP_003512644.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
FY128_RS04305 (FY128_04280)	lon	874029..876446 (+)	2418	WP_003512645.1	endopeptidase La	-
FY128_RS04310 (FY128_04285)	hupB	876735..877010 (+)	276	WP_003496481.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46909.83 Da
• Isoelectric Point: 5.0788

>NTDB_id=369607 FY128_RS04300 WP_003512644.1 872339..873616(+) (clpX) [Agrobacterium tumefaciens strain But001]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISN
DVVSGIARPLYIYADRQEEKANVSA

Nucleotide

• Length: 1278 bp

>NTDB_id=369607 FY128_RS04300 WP_003512644.1 872339..873616(+) (clpX) [Agrobacterium tumefaciens strain But001]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAGAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGACCGACGGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGCGAGG
AGAACAAGACGTCGATGGTGAAGTCGCGCGAGGGTGTTCCCACCCCGCAGGACATCATCAAGATCCTCGACGAATACGTC
ATCGGCCAGAAGCAGGCGAAAAAGATCCTGTCGGTGGCCGTTCACAACCATTACAAGCGCCTTGCGCACGCCTCCAAGAA
TGGCGATGTCGAGCTTGCGAAGTCGAACATCATGCTCGTCGGTCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACGATGGCGGACGCAACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGTTGCAGGCTGCGGATTACAATGTCGAGCGCGCCCAGCGTGGCATCGTCTATATCGACGA
AGTCGACAAGATTTCCCGCAAGTCGGATAACCCGTCCATCACGCGTGACGTGTCGGGCGAGGGCGTTCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTG
GATACGACTAACATTCTCTTCATCTGCGGCGGCGCGTTTGCCGGCCTGGACAAGATCATCTCGGCCAGGGGCGAAAAGAC
CTCGATTGGCTTCGGTGCGACCGTCAAGGCGGAAGACGATCGCCGCGTTGGCGAGGTGCTGCGCGAACTGGAGCCGGAAG
ATCTGGTGAAATTCGGTCTTATTCCGGAATTCATCGGCCGTCTGCCGGTTCTGGCTACGCTGGAGGACCTTGACGAGGAT
GCGCTGATCCAGATCCTGTCCGAGCCGAAGAACGCGCTGGTCAAGCAGTACCAGCGTCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCGTTGCGCGAGATTGCCCGCCGGGCGATTACCCGCAAGACGGGTGCCCGCGGTCTGCGCT
CGATCATGGAAAAGATCCTTCTGGATACCATGTTCGAACTGCCGACGCTGGAAGGCGTGCGCGAAGTGGTGATCTCCAAC
GATGTCGTCAGCGGCATCGCTCGCCCGCTCTACATCTATGCGGATCGTCAGGAAGAAAAGGCCAATGTTTCGGCTTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

3D structure

• AlphaFold DB: A0A1B9V328

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.657	93.882	0.588
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.335	94.824	0.525