Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FY131_RS12410 Genome accession   NZ_CP048573
Coordinates   2573199..2573804 (-) Length   201 a.a.
NCBI ID   WP_111790061.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain cl001     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2568199..2578804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY131_RS12395 (FY131_12325) rimP 2569233..2569829 (-) 597 WP_111790060.1 ribosome maturation factor RimP -
  FY131_RS12400 (FY131_12330) - 2570117..2571745 (+) 1629 WP_076843882.1 MFS transporter -
  FY131_RS12405 (FY131_12335) - 2571837..2573075 (-) 1239 WP_373465230.1 lytic murein transglycosylase -
  FY131_RS12410 (FY131_12340) recR 2573199..2573804 (-) 606 WP_111790061.1 recombination mediator RecR Machinery gene
  FY131_RS12415 (FY131_12345) - 2573842..2574477 (+) 636 WP_162690600.1 MOSC domain-containing protein -
  FY131_RS12420 (FY131_12350) - 2574491..2574814 (-) 324 WP_003514318.1 YbaB/EbfC family nucleoid-associated protein -
  FY131_RS12425 (FY131_12355) - 2574842..2576719 (-) 1878 WP_111790062.1 DNA polymerase III subunit gamma/tau -
  FY131_RS12435 (FY131_12365) - 2577044..2577472 (+) 429 WP_161986907.1 HIT domain-containing protein -
  FY131_RS12440 (FY131_12370) nudC 2577472..2578434 (+) 963 WP_003514323.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21395.73 Da        Isoelectric Point: 6.3321

>NTDB_id=369557 FY131_RS12410 WP_111790061.1 2573199..2573804(-) (recR) [Agrobacterium tumefaciens strain cl001]
MAKRVTGPEIEKLIQLLARVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTIDPCTVCADDRR
DQSVIIVVEDVSDLWALERAGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DRLADLGIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=369557 FY131_RS12410 WP_111790061.1 2573199..2573804(-) (recR) [Agrobacterium tumefaciens strain cl001]
ATGGCAAAACGAGTCACCGGTCCCGAAATCGAAAAACTGATCCAGCTGCTTGCAAGAGTGCCGGGGCTTGGGCCCCGCTC
GGCGCGGCGGGCGGCGCTGCATCTCATCAAGAAGAAGGAACAGCTTCTTGGACCGCTGGGCCACGCGATGGGTGAAGCCT
ATGACAAGGTGAAGATCTGCTCGTGCTGCGGCAATGTCGATACCATCGATCCCTGCACGGTCTGCGCCGATGATAGACGT
GACCAGTCGGTCATCATCGTGGTGGAAGACGTGTCGGATCTGTGGGCGCTGGAGCGAGCAGGCGCCATGAATACCGCCTA
TCATGTGCTTGGTGGCACGCTGTCGCCGCTCGATGGCGTCGGGCCGGAAGATCTGAACATCAAGGGACTGATCGATCGCG
TCAGCGCCGGCGGTATTCGCGAGCTCATCATCGCCGTCAATGCGACGGTGGAGGGACAGGCAACAGCCCATTACATCACC
GACCGCCTGGCCGATCTCGGCATCAAGATCACCCGGCTTGCGCATGGCGTGCCTGTTGGCGGCGAGCTGGACTATCTCGA
TGAGGGCACATTGACGGCGGCGCTGCGCGCTCGCACAACGATCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(45-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.423

96.517

0.458
  recR Bacillus subtilis subsp. subtilis str. 168

45.312

95.522

0.433
  recR Streptococcus pneumoniae R6

38.542

95.522

0.368

Multiple sequence alignment