Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   FY136_RS04865 Genome accession   NZ_CP048551
Coordinates   969049..970326 (+) Length   425 a.a.
NCBI ID   WP_003521528.1    Uniprot ID   A0A1S7PKG6
Organism   Agrobacterium tumefaciens strain Kin002     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 964049..975326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY136_RS04840 (FY136_04810) - 964317..964661 (+) 345 WP_065115429.1 cupin domain-containing protein -
  FY136_RS04845 (FY136_04815) - 964668..964910 (-) 243 WP_262516865.1 type II toxin-antitoxin system VapC family toxin -
  FY136_RS04850 (FY136_04820) - 965086..966333 (-) 1248 WP_142855635.1 cytochrome P450 -
  FY136_RS04855 (FY136_04825) - 966423..967670 (-) 1248 WP_065115432.1 sensor domain-containing diguanylate cyclase -
  FY136_RS04860 (FY136_04830) clpP 968124..968756 (+) 633 WP_003521529.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  FY136_RS04865 (FY136_04835) clpX 969049..970326 (+) 1278 WP_003521528.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  FY136_RS04870 (FY136_04840) - 970524..970892 (+) 369 WP_174031230.1 VOC family protein -
  FY136_RS04875 (FY136_04845) lon 971274..973691 (+) 2418 WP_065115434.1 endopeptidase La -
  FY136_RS04880 (FY136_04850) hupB 973980..974255 (+) 276 WP_003502360.1 DNA-binding protein HupB -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 46897.82 Da        Isoelectric Point: 5.0788

>NTDB_id=369422 FY136_RS04865 WP_003521528.1 969049..970326(+) (clpX) [Agrobacterium tumefaciens strain Kin002]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISN
DVVSGVARPLYIYADRQEEKTNVSA

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=369422 FY136_RS04865 WP_003521528.1 969049..970326(+) (clpX) [Agrobacterium tumefaciens strain Kin002]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAAAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGGCCGACAGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGCGAGG
AGAACAAGACGTCGATGGTGAAGTCGCGCGAGGGTGTTCCCACCCCGCAGGATATCATCAAGATCCTCGACGAATATGTC
ATCGGTCAGAAGCAGGCGAAGAAGATCCTGTCGGTGGCCGTTCACAACCATTACAAGCGCCTCGCGCACGCCTCCAAGAA
CGGCGATGTCGAGCTGGCGAAGTCGAACATCATGCTCGTCGGCCCGACGGGCTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACCATGGCGGACGCAACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGCTTCAGGCTGCGGATTACAACGTCGAGCGCGCCCAGCGCGGCATCGTCTATATCGACGA
AGTCGACAAGATTTCCCGCAAGTCGGACAATCCGTCCATCACGCGCGACGTGTCGGGCGAGGGCGTCCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGCGGTCGCAAGCATCCGCAGCAGGAGTTCCTGCAGGTG
GATACGACCAACATCCTGTTCATCTGCGGCGGCGCGTTTGCCGGCCTCGATAAGATCATCTCGGCCCGTGGTGAAAAGAC
CTCGATCGGCTTCGGTGCGACCGTCAAGGCGGAAGACGATCGCCGTGTGGGCGAGGTGCTGCGTGAGCTGGAGCCGGAAG
ATCTGGTGAAGTTCGGTCTCATCCCGGAATTCATCGGCCGTCTGCCCGTTCTCGCAACGCTGGAAGACCTTGATGAAGAT
GCGCTGATCCAGATCCTGTCCGAGCCGAAGAACGCGCTCGTCAAGCAGTATCAGCGCCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCGCTGCGCGAGATTGCCCGCAAGGCGATCACCCGCAAGACCGGCGCGCGCGGCCTGCGTT
CGATCATGGAAAAGATCCTGCTGGATACCATGTTCGAACTGCCGACCCTGGAAGGCGTTCGCGAAGTGGTGATCTCCAAC
GACGTCGTCAGCGGTGTCGCCCGTCCGCTCTACATCTACGCGGATCGCCAGGAAGAAAAGACCAACGTTTCGGCCTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(317-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(114-310)

ClpX C4-type zinc finger (zf-C4_ClpX)

(16-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S7PKG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

62.907

93.882

0.591
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.335

94.824

0.525