Detailed information NTG0369385

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: FY138_RS04715
• Genome accession: NZ_CP048543
• Coordinates: 939105..940382 (+)
• Length: 425 a.a.
• NCBI ID: WP_003496489.1
• Uniprot ID: A0A822V6D6
• Organism: Agrobacterium tumefaciens strain SJ001
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 934105..945382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FY138_RS04695 (FY138_04665)	-	934398..935132 (+)	735	WP_233283370.1	SDR family NAD(P)-dependent oxidoreductase	-
FY138_RS04700 (FY138_04670)	-	935153..936406 (-)	1254	WP_060726153.1	cytochrome P450	-
FY138_RS04705 (FY138_04675)	-	936479..937726 (-)	1248	WP_099085475.1	sensor domain-containing diguanylate cyclase	-
FY138_RS04710 (FY138_04680)	clpP	938179..938811 (+)	633	WP_003521529.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
FY138_RS04715 (FY138_04685)	clpX	939105..940382 (+)	1278	WP_003496489.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
FY138_RS04720 (FY138_04690)	lon	940797..943214 (+)	2418	WP_003502358.1	endopeptidase La	-
FY138_RS04725 (FY138_04695)	hupB	943504..943779 (+)	276	WP_003502360.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46913.82 Da
• Isoelectric Point: 5.0788

>NTDB_id=369385 FY138_RS04715 WP_003496489.1 939105..940382(+) (clpX) [Agrobacterium tumefaciens strain SJ001]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISN
DVVSGVARPLYIYADRQEEKTNVSA

Nucleotide

• Length: 1278 bp

>NTDB_id=369385 FY138_RS04715 WP_003496489.1 939105..940382(+) (clpX) [Agrobacterium tumefaciens strain SJ001]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAGAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGACCGACGGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGTGAAG
AGAACAAGACATCGATGGTGAAGTCGCGCGAGGGTGTTCCCACCCCGCAGGACATCATCAAGATCCTCGACGAGTATGTC
ATCGGCCAGAAGCAGGCGAAGAAAATCCTGTCGGTGGCCGTTCACAACCACTACAAGCGCCTCGCGCACGCCTCCAAGAA
CGGCGATGTCGAGCTTGCGAAGTCGAACATCATGCTCGTCGGTCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACCATGGCGGACGCAACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGTTGCAGTCTGCGGATTACAATGTCGAACGCGCCCAGCGCGGCATCGTCTATATCGACGA
AGTCGACAAGATTTCCCGCAAGTCGGACAACCCGTCCATCACGCGCGACGTGTCGGGCGAGGGCGTTCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTG
GATACGACCAACATCCTGTTCATCTGCGGCGGCGCGTTTGCCGGCCTCGACAAGATCATCTCGGCCCGTGGTGAAAAGAC
CTCGATCGGCTTTGGTGCGACCGTCAAGGCGGAAGACGATCGCCGCGTTGGCGAGGTTCTGCGCGAACTGGAGCCCGAAG
ACCTGGTGAAGTTCGGTCTCATCCCGGAATTCATCGGCCGTCTGCCGGTTCTGGCGACGCTGGAGGACCTCGACGAGGAT
GCGCTGATCCAGATCCTGTCCGAGCCGAAGAACGCGCTGGTCAAGCAGTATCAGCGCCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCTCTGCGCGAAATCGCCCGCAAGGCGATCACCCGCAAGACCGGCGCCCGCGGCCTGCGCT
CGATCATGGAGAAAATCCTGCTGGATACCATGTTCGAACTGCCGACGCTGGAAGGCGTACGCGAAGTGGTCATTTCCAAC
GACGTCGTCAGCGGCGTCGCCCGTCCGCTCTACATCTATGCGGATCGTCAGGAAGAAAAGACCAACGTTTCGGCCTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

3D structure

• AlphaFold DB: A0A822V6D6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.657	93.882	0.588
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.087	94.824	0.522