Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FY140_RS23235 Genome accession   NZ_CP048537
Coordinates   2679749..2680354 (-) Length   201 a.a.
NCBI ID   WP_003507177.1    Uniprot ID   A0A822V2D3
Organism   Agrobacterium tumefaciens strain SJ003     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2674749..2685354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY140_RS23220 (FY140_23060) rimP 2675773..2676369 (-) 597 WP_059758925.1 ribosome maturation factor RimP -
  FY140_RS23225 (FY140_23065) - 2676656..2678284 (+) 1629 WP_003524308.1 MFS transporter -
  FY140_RS23230 (FY140_23070) - 2678446..2679711 (-) 1266 WP_262534422.1 lytic murein transglycosylase -
  FY140_RS23235 (FY140_23075) recR 2679749..2680354 (-) 606 WP_003507177.1 recombination mediator RecR Machinery gene
  FY140_RS23240 (FY140_23080) - 2680392..2681027 (+) 636 WP_164865393.1 MOSC domain-containing protein -
  FY140_RS23245 (FY140_23085) - 2681085..2681408 (-) 324 WP_262534425.1 YbaB/EbfC family nucleoid-associated protein -
  FY140_RS23250 (FY140_23090) - 2681433..2683307 (-) 1875 WP_262534428.1 DNA polymerase III subunit gamma/tau -
  FY140_RS23260 (FY140_23100) - 2683551..2683979 (+) 429 WP_059758936.1 HIT domain-containing protein -
  FY140_RS23265 (FY140_23105) nudC 2683979..2684941 (+) 963 WP_127756644.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21413.74 Da        Isoelectric Point: 6.3321

>NTDB_id=369334 FY140_RS23235 WP_003507177.1 2679749..2680354(-) (recR) [Agrobacterium tumefaciens strain SJ003]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTIDPCTVCADDRR
DQSVIIVVEDVSDLWALERTGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DRLSGLDIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=369334 FY140_RS23235 WP_003507177.1 2679749..2680354(-) (recR) [Agrobacterium tumefaciens strain SJ003]
ATGGCAAAACGAGTCACCGGTCCCGAAATTGAAAAACTGATCCAGCTTCTGGCAAAAGTGCCGGGGCTTGGCCCCCGCTC
GGCGCGGCGGGCGGCGTTGCATCTCATCAAGAAGAAGGAACAGCTTCTCGGGCCGCTGGGCCATGCCATGGGCGAGGCCT
ATGACAAGGTGAAGATCTGCTCCTGCTGCGGCAATGTCGATACGATCGATCCCTGCACCGTCTGCGCCGACGACCGGCGT
GACCAGTCGGTCATCATCGTGGTGGAGGACGTGTCGGATCTCTGGGCGCTGGAGCGGACGGGTGCGATGAACACCGCCTA
TCACGTTCTGGGCGGCACGCTTTCGCCGCTCGACGGCGTCGGGCCGGAGGATTTGAATATCAAGGGCCTGATCGACCGTG
TCAGCGCCGGCGGCATTCGCGAGCTTATCATCGCCGTCAATGCGACGGTGGAGGGGCAGGCAACCGCCCACTACATTACC
GACCGCCTTTCCGGTCTCGACATCAAGATCACCCGGCTTGCTCACGGCGTGCCGGTGGGCGGTGAACTCGATTATCTCGA
CGAGGGTACGTTGACGGCGGCGCTTCGGGCGCGCACGACGATCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(45-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822V2D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.392

96.517

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

45.312

95.522

0.433
  recR Streptococcus pneumoniae R6

38.542

95.522

0.368