Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FY140_RS16215 Genome accession   NZ_CP048537
Coordinates   1196108..1196686 (-) Length   192 a.a.
NCBI ID   WP_162936646.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain SJ003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1191108..1201686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY140_RS16200 (FY140_16070) gyrA 1191117..1193909 (-) 2793 WP_080852025.1 DNA gyrase subunit A -
  FY140_RS16205 (FY140_16075) - 1194127..1194756 (+) 630 WP_262535301.1 MarC family protein -
  FY140_RS16210 (FY140_16080) - 1194889..1196037 (+) 1149 WP_262535302.1 HPP family protein -
  FY140_RS16215 (FY140_16085) ssb 1196108..1196686 (-) 579 WP_162936646.1 single-stranded DNA-binding protein Machinery gene
  FY140_RS16220 (FY140_16090) uvrA 1196951..1199872 (+) 2922 WP_262535305.1 excinuclease ABC subunit UvrA Machinery gene
  FY140_RS16225 (FY140_16095) - 1199929..1200729 (+) 801 WP_262535306.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20555.42 Da        Isoelectric Point: 4.7391

>NTDB_id=369314 FY140_RS16215 WP_162936646.1 1196108..1196686(-) (ssb) [Agrobacterium tumefaciens strain SJ003]
MQLPVMMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGRSGGDFGGGNDYGSGGGSGYGGGY
DQQSSSRGGSSRSGGGQPSGGFSNDMDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=369314 FY140_RS16215 WP_162936646.1 1196108..1196686(-) (ssb) [Agrobacterium tumefaciens strain SJ003]
ATGCAATTGCCGGTCATGATGGCCGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAA
CGTGGGCGCCGATCCCGAAATCCGCCGGACGCAGGATGGCCGCCCCATCGCCAATCTGCGCATTGCCACCTCGGAGACCT
GGCGGGACCGTAACAGCGGCGAGCGCCGCGAAAAGACCGAATGGCACACCGTCGTCGTCTTCAACGAAGGCCTGTGCAAG
GTCGTCGAGCAATATGTAAAAAAGGGCGCCAAGCTCTATATTGAAGGCCAGTTGCAGACGCGCAAATGGCAGGACCAGAC
CGGCAACGACCGTTACTCCACCGAAATCGTTTTGCAGGGTTTCAACTCCACGCTGACGATGCTCGATGGTCGCGGTGAGG
GCGGTGGCCGCAGCGGCGGCGATTTCGGCGGCGGCAATGATTATGGCAGCGGCGGCGGCTCGGGTTATGGCGGTGGTTAC
GACCAGCAGTCCTCGTCGCGCGGCGGCTCTTCCCGTAGCGGCGGCGGCCAGCCTTCCGGCGGCTTCTCCAACGATATGGA
TGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.114

100

0.464
  ssb Vibrio cholerae strain A1552

49.714

91.146

0.453