Detailed information NTG0369310

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: FY140_RS14980
• Genome accession: NZ_CP048537
• Coordinates: 930392..931669 (+)
• Length: 425 a.a.
• NCBI ID: WP_059752638.1
• Uniprot ID: A0A1S7TM09
• Organism: Agrobacterium tumefaciens strain SJ003
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 925392..936669

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FY140_RS14955 (FY140_14850)	-	925423..925935 (+)	513	WP_262535140.1	hypothetical protein	-
FY140_RS14960 (FY140_14855)	-	926050..926391 (+)	342	WP_080817196.1	cupin domain-containing protein	-
FY140_RS14965 (FY140_14860)	-	926430..927683 (-)	1254	WP_262535141.1	cytochrome P450	-
FY140_RS14970 (FY140_14865)	-	927766..929013 (-)	1248	WP_080817194.1	sensor domain-containing diguanylate cyclase	-
FY140_RS14975 (FY140_14870)	clpP	929466..930098 (+)	633	WP_003521529.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
FY140_RS14980 (FY140_14875)	clpX	930392..931669 (+)	1278	WP_059752638.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
FY140_RS14985 (FY140_14880)	lon	932085..934502 (+)	2418	WP_262535142.1	endopeptidase La	-
FY140_RS14990 (FY140_14885)	hupB	934792..935067 (+)	276	WP_003502360.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46926.86 Da
• Isoelectric Point: 5.0063

>NTDB_id=369310 FY140_RS14980 WP_059752638.1 930392..931669(+) (clpX) [Agrobacterium tumefaciens strain SJ003]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISD
EVVSGLARPLYIYADRQEEKTNVSA

Nucleotide

• Length: 1278 bp

>NTDB_id=369310 FY140_RS14980 WP_059752638.1 930392..931669(+) (clpX) [Agrobacterium tumefaciens strain SJ003]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAAAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGACCGACGGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGCGAGG
AGAACAAGACGTCGATGGTGAAGTCGCGCGAGGGTGTGCCCACCCCGCAGGACATCATCAAGATCCTCGACGAATACGTC
ATCGGTCAGAAGCAGGCGAAGAAAATCCTGTCTGTGGCCGTTCACAACCATTACAAGCGCCTCGCGCACGCGTCCAAGAA
CGGCGATGTCGAGCTGGCGAAGTCGAACATCATGCTCGTCGGTCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACAC
TCGCCCGCATCATCGACGTTCCCTTCACCATGGCGGACGCAACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGTTGCAGGCTGCGGATTACAATGTCGAGCGCGCCCAGCGCGGCATCGTCTATATCGACGA
GGTCGACAAGATTTCCCGCAAGTCGGACAACCCGTCCATCACGCGTGACGTGTCGGGCGAGGGCGTCCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGTGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTG
GATACGACCAACATCCTGTTCATCTGCGGCGGCGCCTTTGCCGGCCTCGACAAGATCATCTCGGCCCGTGGTGAAAAGAC
CTCGATCGGCTTCGGTGCGACCGTCAAGGCGGAAGACGATCGCCGCGTCGGCGAGGTGCTGCGCGAGCTGGAGCCCGAAG
ATCTGGTGAAGTTCGGTCTCATTCCGGAGTTCATCGGCCGTCTGCCGGTTCTTGCCACGTTGGAAGACCTCGACGAGGAT
GCGCTGATCCAGATTCTGTCCGAGCCGAAGAACGCTCTGGTCAAGCAGTATCAGCGCCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCCCTTCGTGAGATCGCGCGCAAGGCGATCACCCGCAAGACCGGCGCCCGCGGCCTGCGTT
CGATCATGGAAAAGATTTTGCTCGACACCATGTTCGAACTGCCGACGCTGGAAGGCGTGCGCGAAGTGGTCATTTCCGAC
GAGGTCGTCAGCGGCCTTGCACGCCCGCTCTACATCTATGCGGACCGTCAGGAAGAAAAGACCAACGTTTCGGCCTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-389)

3D structure

• AlphaFold DB: A0A1S7TM09

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.907	93.882	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.583	94.824	0.527