Detailed information NTG0369274

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: FY141_RS04740
• Genome accession: NZ_CP048532
• Coordinates: 939171..940448 (+)
• Length: 425 a.a.
• NCBI ID: WP_003496489.1
• Uniprot ID: A0A822V6D6
• Organism: Agrobacterium tumefaciens strain Sta002
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 934171..945448

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FY141_RS04720 (FY141_04690)	-	934464..935198 (+)	735	WP_233283370.1	SDR family NAD(P)-dependent oxidoreductase	-
FY141_RS04725 (FY141_04695)	-	935219..936472 (-)	1254	WP_060726153.1	cytochrome P450	-
FY141_RS04730 (FY141_04700)	-	936545..937792 (-)	1248	WP_099085475.1	sensor domain-containing diguanylate cyclase	-
FY141_RS04735 (FY141_04705)	clpP	938245..938877 (+)	633	WP_003521529.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
FY141_RS04740 (FY141_04710)	clpX	939171..940448 (+)	1278	WP_003496489.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
FY141_RS04745 (FY141_04715)	lon	940863..943280 (+)	2418	WP_003502358.1	endopeptidase La	-
FY141_RS04750 (FY141_04720)	hupB	943570..943845 (+)	276	WP_003502360.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46913.82 Da
• Isoelectric Point: 5.0788

>NTDB_id=369274 FY141_RS04740 WP_003496489.1 939171..940448(+) (clpX) [Agrobacterium tumefaciens strain Sta002]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISN
DVVSGVARPLYIYADRQEEKTNVSA

Nucleotide

• Length: 1278 bp

>NTDB_id=369274 FY141_RS04740 WP_003496489.1 939171..940448(+) (clpX) [Agrobacterium tumefaciens strain Sta002]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAGAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGACCGACGGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGTGAAG
AGAACAAGACATCGATGGTGAAGTCGCGCGAGGGTGTTCCCACCCCGCAGGACATCATCAAGATCCTCGACGAGTATGTC
ATCGGCCAGAAGCAGGCGAAGAAAATCCTGTCGGTGGCCGTTCACAACCACTACAAGCGCCTCGCGCACGCCTCCAAGAA
CGGCGATGTCGAGCTTGCGAAGTCGAACATCATGCTCGTCGGTCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACCATGGCGGACGCAACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGTTGCAGTCTGCGGATTACAATGTCGAACGCGCCCAGCGCGGCATCGTCTATATCGACGA
AGTCGACAAGATTTCCCGCAAGTCGGACAACCCGTCCATCACGCGCGACGTGTCGGGCGAGGGCGTTCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTG
GATACGACCAACATCCTGTTCATCTGCGGCGGCGCGTTTGCCGGCCTCGACAAGATCATCTCGGCCCGTGGTGAAAAGAC
CTCGATCGGCTTTGGTGCGACCGTCAAGGCGGAAGACGATCGCCGCGTTGGCGAGGTTCTGCGCGAACTGGAGCCCGAAG
ACCTGGTGAAGTTCGGTCTCATCCCGGAATTCATCGGCCGTCTGCCGGTTCTGGCGACGCTGGAGGACCTCGACGAGGAT
GCGCTGATCCAGATCCTGTCCGAGCCGAAGAACGCGCTGGTCAAGCAGTATCAGCGCCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCTCTGCGCGAAATCGCCCGCAAGGCGATCACCCGCAAGACCGGCGCCCGCGGCCTGCGCT
CGATCATGGAGAAAATCCTGCTGGATACCATGTTCGAACTGCCGACGCTGGAAGGCGTACGCGAAGTGGTCATTTCCAAC
GACGTCGTCAGCGGCGTCGCCCGTCCGCTCTACATCTATGCGGATCGTCAGGAAGAAAAGACCAACGTTTCGGCCTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

3D structure

• AlphaFold DB: A0A822V6D6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.657	93.882	0.588
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.087	94.824	0.522