Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FY142_RS13355 Genome accession   NZ_CP048528
Coordinates   2724719..2725324 (-) Length   201 a.a.
NCBI ID   WP_003507177.1    Uniprot ID   A0A822V2D3
Organism   Agrobacterium tumefaciens strain Sta003     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2719719..2730324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY142_RS13335 (FY142_13270) rimP 2720339..2720935 (-) 597 WP_003507173.1 ribosome maturation factor RimP -
  FY142_RS13340 (FY142_13275) - 2721223..2722851 (+) 1629 WP_035213075.1 MFS transporter -
  FY142_RS13345 (FY142_13280) - 2722937..2723398 (+) 462 WP_087743151.1 GNAT family N-acetyltransferase -
  FY142_RS13350 (FY142_13285) - 2723415..2724680 (-) 1266 WP_099085768.1 lytic murein transglycosylase -
  FY142_RS13355 (FY142_13290) recR 2724719..2725324 (-) 606 WP_003507177.1 recombination mediator RecR Machinery gene
  FY142_RS13360 (FY142_13295) - 2725362..2725997 (+) 636 WP_003507178.1 MOSC domain-containing protein -
  FY142_RS13365 (FY142_13300) - 2726064..2726387 (-) 324 WP_003507179.1 YbaB/EbfC family nucleoid-associated protein -
  FY142_RS13370 (FY142_13305) - 2726412..2728289 (-) 1878 WP_099085767.1 DNA polymerase III subunit gamma/tau -
  FY142_RS13380 (FY142_13315) - 2728531..2728959 (+) 429 WP_035213077.1 HIT domain-containing protein -
  FY142_RS13385 (FY142_13320) nudC 2728959..2729921 (+) 963 WP_003507186.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21413.74 Da        Isoelectric Point: 6.3321

>NTDB_id=369261 FY142_RS13355 WP_003507177.1 2724719..2725324(-) (recR) [Agrobacterium tumefaciens strain Sta003]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTIDPCTVCADDRR
DQSVIIVVEDVSDLWALERTGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DRLSGLDIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=369261 FY142_RS13355 WP_003507177.1 2724719..2725324(-) (recR) [Agrobacterium tumefaciens strain Sta003]
ATGGCAAAACGAGTCACCGGTCCCGAAATTGAAAAACTCATCCAGCTTCTGGCAAAAGTGCCGGGGCTTGGGCCCCGCTC
GGCGCGGCGGGCAGCGTTGCATCTCATCAAGAAGAAGGAGCAACTTCTCGGACCGCTGGGCCATGCCATGGGCGAGGCCT
ATGACAAGGTGAAGATCTGCTCCTGCTGCGGCAATGTCGATACCATCGATCCCTGCACCGTCTGCGCTGACGACCGGCGT
GACCAGTCGGTCATCATCGTGGTGGAAGACGTATCGGATCTCTGGGCGCTGGAGCGGACGGGCGCGATGAACACCGCCTA
CCACGTTCTCGGCGGCACGCTTTCGCCACTCGATGGCGTCGGGCCGGAGGACCTGAATATCAAGGGCCTGATCGACCGTG
TCAGCGCGGGCGGCATTCGCGAGCTTATCATCGCCGTCAATGCGACGGTGGAGGGACAGGCAACCGCCCATTACATCACC
GACCGCCTCTCCGGTCTCGACATCAAGATCACCCGGCTTGCGCATGGCGTGCCGGTGGGCGGTGAGCTCGATTATCTCGA
CGAGGGCACATTGACGGCGGCGCTTCGGGCGCGCACGACGATCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(45-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822V2D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.392

96.517

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

45.312

95.522

0.433
  recR Streptococcus pneumoniae R6

38.542

95.522

0.368