Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FJM75_RS13960 Genome accession   NZ_CP041063
Coordinates   2785495..2786868 (+) Length   457 a.a.
NCBI ID   WP_165999134.1    Uniprot ID   -
Organism   Bacillus sp. Cs-700     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2780495..2791868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJM75_RS13940 - 2780679..2781140 (+) 462 WP_159780801.1 CtsR family transcriptional regulator -
  FJM75_RS13945 - 2781169..2781705 (+) 537 WP_165999128.1 UvrB/UvrC motif-containing protein -
  FJM75_RS13950 - 2781705..2782802 (+) 1098 WP_165999130.1 protein arginine kinase -
  FJM75_RS13955 clpC 2782799..2785240 (+) 2442 WP_165999132.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  FJM75_RS13960 radA 2785495..2786868 (+) 1374 WP_165999134.1 DNA repair protein RadA Machinery gene
  FJM75_RS13965 disA 2786872..2787933 (+) 1062 WP_165999136.1 DNA integrity scanning diadenylate cyclase DisA -
  FJM75_RS13970 - 2788094..2789191 (+) 1098 WP_165999138.1 PIN/TRAM domain-containing protein -
  FJM75_RS13975 ispD 2789217..2789909 (+) 693 WP_165999140.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FJM75_RS13980 ispF 2789906..2790382 (+) 477 WP_207393218.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49902.32 Da        Isoelectric Point: 6.5121

>NTDB_id=369255 FJM75_RS13960 WP_165999134.1 2785495..2786868(+) (radA) [Bacillus sp. Cs-700]
MAKKKTKFMCQDCGYESPKWMGKCPGCHQWNTMVEEMVPGDNDRRRFVTSSNETASKPTSIRSIQKEMEPRILTHITELD
RVLGGGVVPGSLVLVGGDPGIGKSTLLLQTSSKLAGQDHPVLYISGEESVKQTKLRADRLGVDAEKLFVLAETDLEYISK
AIEEINPQLVIIDSIQTIFRSEVTSAPGSVSQVRECTSQLMRIAKTKGIAVFIVGHVTKEGSIAGPRLLEHMVDAVLYFE
GERHHTFRILRGVKNRFGSTNEIGVFEMKEEGLEEVLNPSEIFLEERSSGSAGSTVVASMEGTRTVLVEIQALISPTSFG
NPRRTATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLNVAGGVRLDEPAIDLAIAVSIASSFRDKPTRPSDIVVGEIGLTG
EIRRVSRIEQRVIEAAKLGFERAIIPKKNIGGWTFPEGIQVIGVQTVDEALKEALGG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=369255 FJM75_RS13960 WP_165999134.1 2785495..2786868(+) (radA) [Bacillus sp. Cs-700]
ATGGCGAAGAAAAAGACGAAATTTATGTGTCAGGATTGCGGCTATGAATCTCCAAAATGGATGGGGAAATGTCCAGGATG
TCATCAATGGAACACGATGGTAGAAGAAATGGTTCCAGGGGATAACGATCGTAGACGTTTCGTTACTTCAAGCAATGAAA
CGGCGAGCAAACCGACATCTATTAGAAGTATTCAAAAAGAAATGGAGCCTAGAATACTAACCCACATCACGGAACTTGAT
CGTGTATTAGGCGGTGGTGTTGTTCCAGGTTCACTCGTTCTTGTTGGGGGTGATCCGGGGATTGGTAAATCAACGCTCTT
ATTACAAACGTCGTCGAAGTTAGCTGGTCAGGACCACCCCGTTCTGTACATCTCTGGTGAGGAGTCGGTCAAGCAAACGA
AGCTTCGTGCAGATCGCTTAGGTGTTGATGCGGAAAAATTATTTGTATTAGCGGAGACGGATCTTGAGTATATTAGTAAA
GCGATTGAAGAAATAAACCCGCAACTTGTCATTATCGACTCAATTCAAACGATTTTTAGATCAGAAGTTACATCTGCTCC
GGGGAGTGTTTCTCAAGTTCGCGAATGTACTTCCCAACTTATGCGTATAGCTAAAACAAAGGGTATTGCAGTTTTTATTG
TCGGACATGTGACGAAAGAAGGATCAATTGCGGGTCCGAGACTTTTAGAACATATGGTAGATGCGGTGCTTTACTTTGAG
GGAGAGCGTCACCACACATTTCGAATTCTTCGCGGCGTAAAAAACCGTTTTGGATCGACAAATGAGATAGGTGTCTTTGA
GATGAAGGAAGAGGGGCTTGAAGAAGTACTTAATCCTTCTGAGATTTTTCTAGAAGAACGATCTTCTGGTTCTGCAGGGT
CAACGGTTGTTGCATCTATGGAGGGAACGCGAACGGTGCTTGTCGAAATACAAGCCCTCATATCACCTACTAGCTTTGGA
AATCCACGTAGAACAGCAACAGGTATTGATCATAACCGAGTATCGTTATTAATGGCGGTTCTTGAGAAAAGAGTAGGTCT
GCTTTTGCAAAACCAGGATGCTTATTTAAATGTGGCTGGTGGTGTAAGACTTGATGAGCCTGCAATTGACCTTGCTATTG
CTGTTTCCATTGCTTCAAGTTTTAGAGACAAACCAACACGTCCTTCTGACATAGTAGTGGGTGAAATTGGATTGACCGGA
GAAATTAGACGAGTATCTCGTATTGAACAACGAGTGATCGAAGCCGCTAAACTTGGTTTTGAACGGGCTATTATTCCAAA
GAAGAATATAGGTGGATGGACTTTTCCAGAAGGCATTCAGGTAATCGGTGTTCAAACAGTGGACGAAGCATTAAAAGAAG
CGCTAGGAGGGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.328

100

0.755
  radA Streptococcus pneumoniae Rx1

61.404

99.781

0.613
  radA Streptococcus pneumoniae D39

61.404

99.781

0.613
  radA Streptococcus pneumoniae R6

61.404

99.781

0.613
  radA Streptococcus pneumoniae TIGR4

61.404

99.781

0.613
  radA Streptococcus mitis NCTC 12261

61.404

99.781

0.613
  radA Streptococcus mitis SK321

61.404

99.781

0.613

Multiple sequence alignment