Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FJM75_RS05420 Genome accession   NZ_CP041063
Coordinates   1060327..1062024 (-) Length   565 a.a.
NCBI ID   WP_160918835.1    Uniprot ID   -
Organism   Bacillus sp. Cs-700     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1055327..1067024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJM75_RS05405 - 1057442..1057681 (+) 240 WP_237438544.1 DUF2627 domain-containing protein -
  FJM75_RS05410 spo0A 1057862..1058662 (-) 801 WP_165996585.1 sporulation transcription factor Spo0A Regulator
  FJM75_RS05415 spoIVB 1058907..1060202 (-) 1296 WP_165996587.1 SpoIVB peptidase -
  FJM75_RS05420 recN 1060327..1062024 (-) 1698 WP_160918835.1 DNA repair protein RecN Machinery gene
  FJM75_RS05425 argR 1062058..1062507 (-) 450 WP_098444159.1 transcriptional regulator ArgR -
  FJM75_RS05430 - 1062675..1063481 (-) 807 WP_165996589.1 TlyA family RNA methyltransferase -
  FJM75_RS05435 dxs 1063488..1065380 (-) 1893 WP_165996591.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FJM75_RS05440 - 1065399..1066007 (-) 609 WP_098444162.1 hypothetical protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63829.01 Da        Isoelectric Point: 4.6609

>NTDB_id=369231 FJM75_RS05420 WP_160918835.1 1060327..1062024(-) (recN) [Bacillus sp. Cs-700]
MLAELSIRNFAIIEAITVSFERGLTVLTGETGAGKSIIIDAIGLLVGGRGSAEFVRYGTKKAEIEGLFHIDTNHPTVQKL
EDVGIEFTDDMVVLRRDISHTGKSICRVNGKLVTLGILREIGQTLIDIHGQHEHQDLMQSDKHLTLLDQFGERSIGPALF
EYREIFQRYKKIQQQMKNLTENEQQMAHRLDLIQYQLEEITKAELSPNEDDQLMDEKLRLGNFEKLYTALQDVYDSLHGD
NKGLDWVGLAMSQLESVADLDEELQGYHEEVANQFYLLEETAGKLNTYRDQLEFDPARLDFVEERLNEIQLLKRKYGESV
EDILEYAASIEDEVDELLNREDRVDELQADLKGIKADLTVEAHNLTGLRKKVASELVGSIHHELRDLYMEKTEFAIHFND
RDESKKDFFHRSGQDDIDFMISTNPGEPLKELSKTASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVAQAMAE
KIQRLSAGSQVLVITHLPQVAAMADHHLYISKEETGEGRTKTSVGNLSTDEQIEELGRMIAGAEMTELTKKHAKELLYQA
NQIKS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=369231 FJM75_RS05420 WP_160918835.1 1060327..1062024(-) (recN) [Bacillus sp. Cs-700]
ATGTTAGCGGAACTATCCATTCGTAATTTTGCGATCATAGAAGCGATTACCGTTTCATTTGAGCGTGGGTTAACCGTTCT
TACTGGAGAAACAGGTGCTGGTAAATCCATCATTATTGATGCCATAGGGCTATTAGTTGGTGGGAGAGGTTCAGCTGAAT
TCGTTCGTTATGGAACGAAAAAAGCAGAAATTGAAGGATTATTTCATATTGATACAAACCATCCAACGGTGCAAAAACTT
GAAGATGTCGGAATCGAATTTACAGATGACATGGTAGTACTGCGCCGTGATATTTCACATACAGGTAAAAGCATCTGCCG
AGTAAATGGAAAGTTAGTGACGCTTGGAATTTTGAGAGAGATTGGTCAAACGCTTATTGACATTCACGGTCAGCATGAAC
ATCAGGATTTAATGCAATCTGATAAGCATCTTACTTTGCTCGATCAGTTTGGAGAACGTTCAATTGGTCCGGCTCTTTTT
GAATACAGGGAAATCTTTCAAAGATACAAAAAAATCCAGCAGCAAATGAAAAATTTAACCGAGAATGAACAGCAGATGGC
TCATAGGCTGGATTTAATTCAATATCAACTTGAAGAAATCACGAAAGCTGAGCTTTCTCCTAATGAAGATGATCAGTTAA
TGGACGAGAAATTACGATTAGGTAATTTTGAGAAACTATATACCGCTCTTCAGGATGTTTATGATTCCCTACATGGAGAT
AATAAAGGACTAGACTGGGTAGGGCTTGCGATGTCACAACTAGAGTCAGTTGCGGACCTTGATGAAGAACTACAGGGATA
CCATGAAGAAGTAGCTAATCAATTTTATCTACTTGAAGAAACGGCAGGTAAATTAAATACATATCGTGATCAACTTGAAT
TTGATCCCGCACGATTGGATTTTGTAGAAGAACGACTAAACGAAATCCAATTATTAAAGCGAAAGTATGGAGAATCGGTA
GAAGACATATTGGAATATGCAGCTTCGATTGAAGATGAAGTAGATGAATTATTAAACAGAGAAGATCGCGTAGACGAGCT
ACAGGCTGACTTAAAGGGTATTAAGGCTGATTTAACAGTAGAGGCTCATAATTTGACCGGTCTGCGAAAAAAAGTAGCTA
GTGAGCTTGTTGGATCAATTCACCATGAGCTTAGAGATCTTTATATGGAAAAAACAGAATTTGCAATTCATTTTAATGAT
CGTGATGAAAGTAAGAAAGACTTTTTCCATCGATCCGGACAAGATGATATTGATTTTATGATCTCTACCAATCCAGGCGA
GCCGCTTAAGGAGCTTTCTAAAACGGCTTCTGGTGGCGAGTTATCTCGTATCATGTTAGCGTTGAAGTCCATCTTCTCAA
AACATCAAGGTATTACATCAATTATATTTGACGAAGTAGATACTGGTGTAAGTGGAAGGGTCGCTCAAGCGATGGCGGAG
AAGATACAGCGTCTTTCAGCCGGGTCTCAAGTACTTGTAATTACTCATCTTCCTCAAGTTGCAGCCATGGCTGATCATCA
CCTTTATATTTCAAAAGAAGAAACGGGTGAAGGTCGAACAAAGACAAGTGTTGGAAATTTAAGTACAGATGAGCAAATAG
AAGAACTTGGAAGAATGATTGCTGGCGCCGAAATGACAGAGCTTACAAAGAAACATGCAAAAGAATTGTTATATCAAGCA
AACCAAATTAAATCATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

58.435

100

0.595

Multiple sequence alignment