Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   FIV54_RS09560 Genome accession   NZ_CP041037
Coordinates   1865916..1866902 (-) Length   328 a.a.
NCBI ID   WP_000959284.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NP66     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1860916..1871902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV54_RS09535 (FIV54_09550) - 1861175..1861522 (-) 348 WP_001242102.1 hypothetical protein -
  FIV54_RS09540 (FIV54_09555) - 1861708..1862301 (+) 594 WP_145326146.1 CYTH domain-containing protein -
  FIV54_RS09545 (FIV54_09560) - 1862405..1862770 (+) 366 WP_000214068.1 truncated hemoglobin YjbI -
  FIV54_RS09550 (FIV54_09565) yjbH 1862793..1863599 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  FIV54_RS09555 (FIV54_09570) pepF 1864060..1865868 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  FIV54_RS09560 (FIV54_09575) coiA 1865916..1866902 (-) 987 WP_000959284.1 competence protein CoiA Machinery gene
  FIV54_RS09565 (FIV54_09580) mecA 1867023..1867742 (-) 720 WP_001217728.1 adaptor protein MecA -
  FIV54_RS09570 (FIV54_09585) spxA 1868113..1868508 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  FIV54_RS09575 (FIV54_09590) trpS 1868803..1869792 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  FIV54_RS09580 (FIV54_09595) opp4C 1869834..1870715 (-) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  FIV54_RS09585 (FIV54_09600) opp4B 1870727..1871689 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38810.39 Da        Isoelectric Point: 9.5881

>NTDB_id=369127 FIV54_RS09560 WP_000959284.1 1865916..1866902(-) (coiA) [Staphylococcus aureus strain NP66]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=369127 FIV54_RS09560 WP_000959284.1 1865916..1866902(-) (coiA) [Staphylococcus aureus strain NP66]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTATTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982

Multiple sequence alignment