Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FIV54_RS06125 Genome accession   NZ_CP041037
Coordinates   1173816..1174502 (+) Length   228 a.a.
NCBI ID   WP_001837962.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NP66     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1168816..1179502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV54_RS06090 (FIV54_06100) yqeH 1169343..1170443 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  FIV54_RS06095 (FIV54_06105) aroE 1170457..1171263 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  FIV54_RS06100 (FIV54_06110) yhbY 1171267..1171557 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  FIV54_RS06105 (FIV54_06115) nadD 1171560..1172129 (+) 570 WP_000725168.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  FIV54_RS06110 (FIV54_06120) yqeK 1172119..1172703 (+) 585 WP_001019322.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  FIV54_RS06115 (FIV54_06125) rsfS 1172704..1173057 (+) 354 WP_001088020.1 ribosome silencing factor -
  FIV54_RS06120 (FIV54_06130) - 1173060..1173776 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  FIV54_RS06125 (FIV54_06135) comEA 1173816..1174502 (+) 687 WP_001837962.1 ComEA family DNA-binding protein Machinery gene
  FIV54_RS06130 (FIV54_06140) - 1174594..1175055 (+) 462 WP_000439691.1 ComE operon protein 2 -
  FIV54_RS06135 (FIV54_06145) - 1175060..1177235 (+) 2176 Protein_1144 DNA internalization-related competence protein ComEC/Rec2 -
  FIV54_RS06140 (FIV54_06150) holA 1177292..1178266 (+) 975 WP_001282561.1 DNA polymerase III subunit delta -
  FIV54_RS06145 (FIV54_06155) rpsT 1178311..1178562 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25861.57 Da        Isoelectric Point: 9.6751

>NTDB_id=369113 FIV54_RS06125 WP_001837962.1 1173816..1174502(+) (comEA) [Staphylococcus aureus strain NP66]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=369113 FIV54_RS06125 WP_001837962.1 1173816..1174502(+) (comEA) [Staphylococcus aureus strain NP66]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.559

99.561

0.991
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974

Multiple sequence alignment