Detailed information NTG0369049

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: FIM01_RS11405
• Genome accession: NZ_CP041035
• Coordinates: 2290028..2290729 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain 11W359501
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2285028..2295729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIM01_RS11375 (FIM01_11375)	-	2285335..2285778 (-)	444	WP_001246675.1	SRPBCC family protein	-
FIM01_RS11380 (FIM01_11380)	tadA	2285848..2286351 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
FIM01_RS11385 (FIM01_11385)	-	2286358..2287482 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
FIM01_RS11390 (FIM01_11390)	ung	2287479..2288192 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
FIM01_RS11395 (FIM01_11395)	-	2288243..2288839 (-)	597	WP_000908449.1	6-pyruvoyl trahydropterin synthase family protein	-
FIM01_RS11400 (FIM01_11400)	gspK	2289069..2290028 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
FIM01_RS11405 (FIM01_11405)	xcpW	2290028..2290729 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
FIM01_RS11410 (FIM01_11410)	xcpV	2290729..2291109 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
FIM01_RS11415 (FIM01_11415)	-	2291099..2291653 (-)	555	WP_000841373.1	type II secretion system protein	-
FIM01_RS11420 (FIM01_11420)	-	2291663..2292271 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
FIM01_RS11425 (FIM01_11425)	-	2292309..2293082 (-)	774	WP_000497300.1	TatD family hydrolase	-
FIM01_RS11430 (FIM01_11430)	-	2293100..2293441 (-)	342	WP_001183027.1	PilZ domain-containing protein	-
FIM01_RS11435 (FIM01_11435)	-	2293453..2294433 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
FIM01_RS11440 (FIM01_11440)	kdsB	2294445..2295206 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=369049 FIM01_RS11405 WP_000594579.1 2290028..2290729(-) (xcpW) [Acinetobacter baumannii strain 11W359501]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=369049 FIM01_RS11405 WP_000594579.1 2290028..2290729(-) (xcpW) [Acinetobacter baumannii strain 11W359501]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983