Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FY153_RS13310 Genome accession   NZ_CP048481
Coordinates   2686275..2686880 (-) Length   201 a.a.
NCBI ID   WP_003524309.1    Uniprot ID   A0A9X3KDD9
Organism   Agrobacterium tumefaciens strain Tul004     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2681275..2691880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY153_RS13290 (FY153_13210) rimP 2681896..2682492 (-) 597 WP_003507173.1 ribosome maturation factor RimP -
  FY153_RS13295 (FY153_13215) - 2682780..2684408 (+) 1629 WP_035213075.1 MFS transporter -
  FY153_RS13300 (FY153_13220) - 2684494..2684955 (+) 462 WP_087743151.1 GNAT family N-acetyltransferase -
  FY153_RS13305 (FY153_13225) - 2684972..2686237 (-) 1266 WP_087743153.1 lytic murein transglycosylase -
  FY153_RS13310 (FY153_13230) recR 2686275..2686880 (-) 606 WP_003524309.1 recombination mediator RecR Machinery gene
  FY153_RS13315 (FY153_13235) - 2686918..2687553 (+) 636 WP_262513190.1 MOSC domain-containing protein -
  FY153_RS13320 (FY153_13240) - 2687619..2687942 (-) 324 WP_003507179.1 YbaB/EbfC family nucleoid-associated protein -
  FY153_RS13325 (FY153_13245) - 2687967..2689844 (-) 1878 WP_111794269.1 DNA polymerase III subunit gamma/tau -
  FY153_RS13335 (FY153_13255) - 2690086..2690514 (+) 429 WP_162686882.1 HIT domain-containing protein -
  FY153_RS13340 (FY153_13260) nudC 2690514..2691476 (+) 963 WP_003507186.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21443.77 Da        Isoelectric Point: 6.3321

>NTDB_id=368962 FY153_RS13310 WP_003524309.1 2686275..2686880(-) (recR) [Agrobacterium tumefaciens strain Tul004]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDKVKICSCCGNVDTIDPCTVCTDDRR
DQSVIIVVEDVSDLWALERTGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DRLSGLDIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=368962 FY153_RS13310 WP_003524309.1 2686275..2686880(-) (recR) [Agrobacterium tumefaciens strain Tul004]
ATGGCAAAACGAGTCACCGGTCCCGAAATTGAAAAACTCATCCAGCTTCTGGCAAAAGTGCCGGGGCTTGGGCCCCGCTC
GGCGCGGCGGGCAGCGTTGCATCTCATCAAGAAGAAGGAGCAACTTCTCGGACCGCTGGGCCATGCCATGGGCGAGGCCT
ATGACAAGGTGAAGATCTGCTCCTGCTGCGGCAATGTCGATACCATCGATCCCTGCACCGTCTGCACCGACGATCGGCGC
GACCAGTCGGTCATCATCGTGGTGGAAGACGTGTCGGATCTCTGGGCGCTGGAGCGGACGGGCGCGATGAACACCGCCTA
CCACGTTCTCGGCGGCACGCTTTCGCCACTCGATGGCGTCGGGCCAGAGGACCTGAATATCAAGGGCCTGATCGACCGTG
TCAGCGCGGGCGGCATTCGCGAGCTTATCATCGCCGTCAATGCGACGGTGGAGGGACAGGCAACCGCCCATTACATCACC
GACCGCCTATCCGGTCTCGACATCAAGATCACCCGGCTTGCGCATGGCGTACCGGTGGGCGGTGAGCTCGATTATCTCGA
CGAGGGCACATTGACGGCGGCGCTTCGGGCGCGCACGACGATCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(45-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X3KDD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.876

96.517

0.443
  recR Bacillus subtilis subsp. subtilis str. 168

45.312

95.522

0.433
  recR Streptococcus pneumoniae R6

39.062

95.522

0.373