Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FY154_RS13210 Genome accession   NZ_CP048477
Coordinates   2693518..2694123 (-) Length   201 a.a.
NCBI ID   WP_060727130.1    Uniprot ID   A0ABD5LIB6
Organism   Agrobacterium tumefaciens strain Yol001     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2688518..2699123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY154_RS13190 (FY154_13125) rimP 2689138..2689734 (-) 597 WP_003507173.1 ribosome maturation factor RimP -
  FY154_RS13195 (FY154_13130) - 2690022..2691650 (+) 1629 WP_060722713.1 MFS transporter -
  FY154_RS13200 (FY154_13135) - 2691736..2692197 (+) 462 WP_113076024.1 GNAT family N-acetyltransferase -
  FY154_RS13205 (FY154_13140) - 2692214..2693479 (-) 1266 WP_060727131.1 lytic murein transglycosylase -
  FY154_RS13210 (FY154_13145) recR 2693518..2694123 (-) 606 WP_060727130.1 recombination mediator RecR Machinery gene
  FY154_RS13215 (FY154_13150) - 2694161..2694796 (+) 636 WP_003507178.1 MOSC domain-containing protein -
  FY154_RS13220 (FY154_13155) - 2694863..2695186 (-) 324 WP_003507179.1 YbaB/EbfC family nucleoid-associated protein -
  FY154_RS13225 (FY154_13160) - 2695211..2697088 (-) 1878 WP_060727129.1 DNA polymerase III subunit gamma/tau -
  FY154_RS13235 (FY154_13170) - 2697330..2697758 (+) 429 WP_035213077.1 HIT domain-containing protein -
  FY154_RS13240 (FY154_13175) nudC 2697758..2698720 (+) 963 WP_003507186.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21416.76 Da        Isoelectric Point: 6.0038

>NTDB_id=368926 FY154_RS13210 WP_060727130.1 2693518..2694123(-) (recR) [Agrobacterium tumefaciens strain Yol001]
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKEQLLGPLGHAMGEAYDMVKICSCCGNVDTIDPCTVCADDRR
DQSVIIVVEDVSDLWALERTGAMNTAYHVLGGTLSPLDGVGPEDLNIKGLIDRVSAGGIRELIIAVNATVEGQATAHYIT
DRLSGLDIKITRLAHGVPVGGELDYLDEGTLTAALRARTTI

Nucleotide


Download         Length: 606 bp        

>NTDB_id=368926 FY154_RS13210 WP_060727130.1 2693518..2694123(-) (recR) [Agrobacterium tumefaciens strain Yol001]
ATGGCAAAACGAGTCACCGGTCCCGAAATTGAAAAACTCATCCAGCTTCTGGCAAAAGTGCCGGGGCTTGGGCCCCGCTC
GGCGCGGCGGGCAGCGTTGCATCTCATCAAGAAGAAGGAGCAACTTCTCGGACCGCTAGGCCATGCCATGGGCGAGGCCT
ATGACATGGTGAAGATCTGCTCCTGCTGCGGCAATGTCGATACCATCGATCCCTGCACCGTCTGCGCTGACGACCGGCGT
GACCAGTCGGTCATCATCGTGGTGGAAGACGTGTCGGATCTCTGGGCGCTGGAGCGGACGGGCGCGATGAACACCGCCTA
CCACGTTCTCGGCGGCACGCTTTCGCCACTCGATGGCGTCGGGCCGGAGGACCTAAATATCAAGGGCCTGATCGACCGTG
TCAGCGCGGGCGGCATTCGCGAGCTTATCATCGCCGTCAATGCGACGGTGGAGGGACAGGCAACCGCCCATTACATCACC
GACCGCCTCTCCGGTCTCGACATCAAGATCACCCGGCTTGCGCATGGCGTGCCGGTGGGCGGTGAGCTCGATTATCTCGA
CGAGGGCACATTGACGGCGGCGCTTCGGGCGCGCACGACGATCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(45-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD5LIB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.392

96.517

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

45.312

95.522

0.433
  recR Streptococcus pneumoniae R6

38.542

95.522

0.368