Detailed information NTG0368901

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: FY154_RS04620
• Genome accession: NZ_CP048477
• Coordinates: 918810..920087 (+)
• Length: 425 a.a.
• NCBI ID: WP_003496489.1
• Uniprot ID: A0A822V6D6
• Organism: Agrobacterium tumefaciens strain Yol001
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 913810..925087

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FY154_RS04600 (FY154_04565)	-	914067..914837 (+)	771	WP_162690818.1	SDR family NAD(P)-dependent oxidoreductase	-
FY154_RS04605 (FY154_04570)	-	914858..916111 (-)	1254	WP_003502351.1	cytochrome P450	-
FY154_RS04610 (FY154_04575)	-	916184..917431 (-)	1248	WP_262514364.1	sensor domain-containing diguanylate cyclase	-
FY154_RS04615 (FY154_04580)	clpP	917884..918516 (+)	633	WP_003521529.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
FY154_RS04620 (FY154_04585)	clpX	918810..920087 (+)	1278	WP_003496489.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
FY154_RS04625 (FY154_04590)	lon	920502..922919 (+)	2418	WP_003502358.1	endopeptidase La	-
FY154_RS04630 (FY154_04595)	hupB	923209..923484 (+)	276	WP_003502360.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46913.82 Da
• Isoelectric Point: 5.0788

>NTDB_id=368901 FY154_RS04620 WP_003496489.1 918810..920087(+) (clpX) [Agrobacterium tumefaciens strain Yol001]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISN
DVVSGVARPLYIYADRQEEKTNVSA

Nucleotide

• Length: 1278 bp

>NTDB_id=368901 FY154_RS04620 WP_003496489.1 918810..920087(+) (clpX) [Agrobacterium tumefaciens strain Yol001]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAGAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGACCGACGGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGTGAAG
AGAACAAGACATCGATGGTGAAGTCGCGCGAGGGTGTTCCCACCCCGCAGGACATCATCAAGATTCTCGACGAATATGTC
ATCGGCCAGAAGCAGGCGAAGAAAATCCTGTCGGTGGCCGTTCACAACCACTACAAGCGCCTCGCGCACGCCTCCAAGAA
CGGCGATGTCGAGCTTGCGAAGTCGAACATCATGCTCGTCGGTCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACCATGGCGGATGCAACGACGCTGACCGAAGCCGGTTACGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGTTGCAGTCTGCGGATTACAATGTCGAACGCGCCCAGCGCGGCATCGTCTATATTGACGA
AGTCGACAAGATTTCCCGCAAGTCGGACAACCCGTCCATCACGCGCGACGTGTCGGGCGAGGGCGTTCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTG
GATACGACCAACATCCTGTTCATCTGCGGCGGCGCGTTTGCCGGCCTCGACAAGATCATCTCGGCCCGTGGTGAAAAGAC
CTCGATCGGCTTTGGTGCGACCGTCAAGGCGGAAGACGATCGCCGCGTTGGCGAGGTTCTGCGCGAACTGGAGCCCGAAG
ACCTGGTGAAGTTCGGTCTCATCCCGGAATTCATCGGCCGTCTGCCGGTTCTGGCGACGCTGGAGGACCTCGACGAGGAT
GCACTGATCCAGATCCTGTCCGAGCCGAAGAACGCGCTGGTCAAGCAGTATCAGCGCCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCTCTGCGCGAAATCGCCCGCAAGGCGATCACCCGCAAGACCGGCGCCCGCGGCCTGCGCT
CGATCATGGAGAAAATCCTGCTGGATACCATGTTCGAACTGCCGACGCTGGAAGGCGTACGCGAAGTGGTCATTTCCAAC
GACGTCGTCAGCGGCGTCGCCCGTCCGCTCTACATCTATGCGGATCGTCAGGAAGAAAAGACCAACGTTTCGGCCTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

3D structure

• AlphaFold DB: A0A822V6D6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.657	93.882	0.588
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.087	94.824	0.522