Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   FIU19_RS01445 Genome accession   NZ_CP041010
Coordinates   219518..220087 (+) Length   189 a.a.
NCBI ID   WP_023487095.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_766     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 214518..225087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU19_RS01420 (FIU19_01420) cysE 215731..216378 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  FIU19_RS01425 (FIU19_01425) cysS 216362..217762 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  FIU19_RS01430 (FIU19_01430) - 217755..218159 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  FIU19_RS01435 (FIU19_01435) rlmB 218167..218913 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FIU19_RS01440 (FIU19_01440) - 218913..219437 (+) 525 WP_000664738.1 NYN domain-containing protein -
  FIU19_RS01445 (FIU19_01445) sigH 219518..220087 (+) 570 WP_023487095.1 sigma-70 family RNA polymerase sigma factor Regulator
  FIU19_RS01450 (FIU19_01450) rpmG 220202..220345 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  FIU19_RS01455 (FIU19_01455) secE 220401..220583 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  FIU19_RS01460 (FIU19_01460) nusG 220596..221144 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  FIU19_RS01465 (FIU19_01465) rplK 221325..221747 (+) 423 WP_001085794.1 50S ribosomal protein L11 -
  FIU19_RS01470 (FIU19_01470) rplA 221955..222647 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  FIU19_RS01480 (FIU19_01480) rplJ 222919..223419 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  FIU19_RS01485 (FIU19_01485) rplL 223462..223830 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  FIU19_RS01490 (FIU19_01490) - 224005..224613 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23000.85 Da        Isoelectric Point: 9.4170

>NTDB_id=368760 FIU19_RS01445 WP_023487095.1 219518..220087(+) (sigH) [Staphylococcus aureus strain FDAARGOS_766]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKAIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=368760 FIU19_RS01445 WP_023487095.1 219518..220087(+) (sigH) [Staphylococcus aureus strain FDAARGOS_766]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGCGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment