Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GZ067_RS07505 Genome accession   NZ_CP048431
Coordinates   1514149..1514745 (-) Length   198 a.a.
NCBI ID   WP_000559156.1    Uniprot ID   Q8NY07
Organism   Staphylococcus aureus strain SA1428     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1509149..1519745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ067_RS07500 (GZ067_07505) - 1513846..1513944 (-) 99 WP_001791812.1 hypothetical protein -
  GZ067_RS07505 (GZ067_07510) recR 1514149..1514745 (-) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  GZ067_RS07510 (GZ067_07515) - 1514752..1515069 (-) 318 WP_164026097.1 YbaB/EbfC family nucleoid-associated protein -
  GZ067_RS07515 (GZ067_07520) dnaX 1515159..1516856 (-) 1698 WP_001109057.1 DNA polymerase III subunit gamma/tau -
  GZ067_RS07520 (GZ067_07525) - 1516925..1517449 (-) 525 WP_001167828.1 N-acetyltransferase -
  GZ067_RS07525 (GZ067_07530) - 1517587..1517688 (-) 102 WP_001790661.1 hypothetical protein -
  GZ067_RS07535 (GZ067_07540) treR 1518092..1518820 (-) 729 WP_000977611.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=368716 GZ067_RS07505 WP_000559156.1 1514149..1514745(-) (recR) [Staphylococcus aureus strain SA1428]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=368716 GZ067_RS07505 WP_000559156.1 1514149..1514745(-) (recR) [Staphylococcus aureus strain SA1428]
ATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAACAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475

Multiple sequence alignment