Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIU14_RS11915 Genome accession   NZ_CP040998
Coordinates   2376954..2377349 (+) Length   131 a.a.
NCBI ID   WP_001836307.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_773     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2371954..2382349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU14_RS11885 (FIU14_11885) - 2373212..2373616 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  FIU14_RS11890 (FIU14_11890) - 2373954..2374046 (+) 93 WP_001790611.1 hypothetical protein -
  FIU14_RS11895 (FIU14_11895) - 2374178..2374411 (+) 234 WP_000384523.1 DUF1146 family protein -
  FIU14_RS11900 (FIU14_11900) murA 2374522..2375787 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FIU14_RS11905 (FIU14_11905) fabZ 2375821..2376261 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FIU14_RS11910 (FIU14_11910) - 2376320..2376760 (-) 441 WP_000846746.1 YwpF-like family protein -
  FIU14_RS11915 (FIU14_11915) ssb 2376954..2377349 (+) 396 WP_001836307.1 single-stranded DNA-binding protein Machinery gene
  FIU14_RS11920 (FIU14_11920) sceD 2377738..2378433 (+) 696 WP_001836306.1 lytic transglycosylase SceD -
  FIU14_RS11925 (FIU14_11925) - 2378566..2380212 (-) 1647 WP_000277738.1 IS1182-like element ISSau3 family transposase -
  FIU14_RS11930 (FIU14_11930) tenA 2380797..2381486 (+) 690 WP_000396077.1 thiaminase II -
  FIU14_RS11935 (FIU14_11935) thiD 2381479..2382309 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=368671 FIU14_RS11915 WP_001836307.1 2376954..2377349(+) (ssb) [Staphylococcus aureus strain FDAARGOS_773]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIRFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=368671 FIU14_RS11915 WP_001836307.1 2376954..2377349(+) (ssb) [Staphylococcus aureus strain FDAARGOS_773]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAGATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment