Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   FIU14_RS05990 Genome accession   NZ_CP040998
Coordinates   1187851..1188420 (-) Length   189 a.a.
NCBI ID   WP_001836184.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_773     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182851..1193420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU14_RS05945 (FIU14_05945) - 1183325..1183933 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  FIU14_RS05950 (FIU14_05950) rplL 1184108..1184476 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  FIU14_RS05955 (FIU14_05955) rplJ 1184519..1185019 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  FIU14_RS05965 (FIU14_05965) rplA 1185291..1185983 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  FIU14_RS05970 (FIU14_05970) rplK 1186191..1186613 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  FIU14_RS05975 (FIU14_05975) nusG 1186794..1187342 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  FIU14_RS05980 (FIU14_05980) secE 1187355..1187537 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  FIU14_RS05985 (FIU14_05985) rpmG 1187593..1187736 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  FIU14_RS05990 (FIU14_05990) sigH 1187851..1188420 (-) 570 WP_001836184.1 sigma-70 family RNA polymerase sigma factor Regulator
  FIU14_RS05995 (FIU14_05995) - 1188501..1189025 (-) 525 WP_000664738.1 NYN domain-containing protein -
  FIU14_RS06000 (FIU14_06000) rlmB 1189025..1189771 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FIU14_RS06005 (FIU14_06005) - 1189779..1190183 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  FIU14_RS06010 (FIU14_06010) cysS 1190176..1191576 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  FIU14_RS06015 (FIU14_06015) cysE 1191560..1192207 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23056.96 Da        Isoelectric Point: 9.4170

>NTDB_id=368661 FIU14_RS05990 WP_001836184.1 1187851..1188420(-) (sigH) [Staphylococcus aureus strain FDAARGOS_773]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=368661 FIU14_RS05990 WP_001836184.1 1187851..1188420(-) (sigH) [Staphylococcus aureus strain FDAARGOS_773]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment