Detailed information NTG0368604

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GZH78_RS19765
• Genome accession: NZ_CP048408
• Coordinates: 4431689..4432972 (-)
• Length: 427 a.a.
• NCBI ID: WP_007951558.1
• Uniprot ID: A0ACD2U437
• Organism: Pseudomonas fluorescens strain DR397
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4426689..4437972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZH78_RS19755 (GZH78_19760)	-	4428709..4428981 (-)	273	WP_002552737.1	HU family DNA-binding protein	-
GZH78_RS19760 (GZH78_19765)	lon	4429130..4431526 (-)	2397	WP_039767614.1	endopeptidase La	-
GZH78_RS19765 (GZH78_19770)	clpX	4431689..4432972 (-)	1284	WP_007951558.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
GZH78_RS19770 (GZH78_19775)	clpP	4433086..4433721 (-)	636	WP_007951559.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
GZH78_RS19775 (GZH78_19780)	tig	4433814..4435124 (-)	1311	WP_074689056.1	trigger factor	-
GZH78_RS19800 (GZH78_19805)	folD	4436277..4437131 (+)	855	WP_163975892.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46912.53 Da
• Isoelectric Point: 4.8431

>NTDB_id=368604 GZH78_RS19765 WP_007951558.1 4431689..4432972(-) (clpX) [Pseudomonas fluorescens strain DR397]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSAHKLPSPKEISGILDQYVI
GQERAKKVLAVAVYNHYKRLNQRDKKADDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPVLATLDELDE
AALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAKRALERKTGARGLRSILEGVLLDTMYEIPSQSEVSKVVID
ESVIEGKSKPLYIYENSEPAAKAAPDA

Nucleotide

• Length: 1284 bp

>NTDB_id=368604 GZH78_RS19765 WP_007951558.1 4431689..4432972(-) (clpX) [Pseudomonas fluorescens strain DR397]
ATGACTGACACCCGCAACGGCGAGGACAACGGCAAGCTGCTCTATTGCTCCTTCTGTGGCAAAAGCCAGCATGAAGTACG
CAAATTGATTGCCGGCCCCTCGGTCTTTATCTGCGACGAGTGCGTCGACCTGTGCAATGACATCATCCGCGAGGAGGTGC
AGGAAGCACAGGCCGAAAGCAGCGCGCATAAATTGCCTTCGCCTAAAGAAATCAGCGGCATCCTTGATCAGTATGTCATT
GGTCAGGAACGTGCCAAGAAGGTTCTGGCAGTAGCGGTGTACAACCACTACAAGCGTCTGAACCAGCGTGACAAAAAGGC
TGACGACGTCGAACTCGGCAAAAGCAACATCCTGCTGATCGGCCCGACAGGCTCCGGTAAAACCCTGCTGGCCGAAACTC
TGGCCCGCTTGCTGAACGTTCCGTTCACCATCGCCGACGCAACCACCCTCACCGAGGCGGGTTACGTGGGTGAAGACGTC
GAGAACATCATTCAGAAGCTGCTGCAGAAGTGCGATTACGACGTAGAGAAAGCCCAGATGGGCATTGTCTACATCGACGA
AATCGACAAGATTTCGCGCAAGTCCGACAACCCGTCGATCACCCGGGACGTTTCCGGTGAAGGCGTGCAGCAGGCCTTGC
TCAAACTGATCGAAGGCACGGTCGCTTCCGTTCCGCCGCAAGGTGGCCGCAAGCATCCGCAGCAGGAATTCCTTCAGGTT
GATACCCGTAACATCCTGTTCATCTGCGGTGGCGCGTTCTCCGGTCTGGAGAAGGTCATTCAGAACCGTTCCACCAAGGG
TGGCATCGGTTTCAACGCAGAAGTGCGCAGCAAGGAAGAAGGCAAGAAAGTCGGTGAATCCCTGCGTGAAGTCGAGCCTG
ACGATCTGGTCAAGTTCGGTCTGATCCCGGAATTCGTCGGTCGTCTGCCGGTCCTGGCGACGCTGGACGAGCTGGATGAG
GCTGCTTTGATGCAGATTCTCACCGAGCCGAAAAATGCCCTGACCAAACAGTATGCCAAGCTGTTCGAGATGGAAGGCGT
GGATCTGGAATTCCGTTCCGACGCGCTGAAATCGGTCGCCAAGCGTGCCCTGGAGCGTAAAACCGGTGCCCGTGGCCTGC
GTTCGATTCTCGAAGGTGTACTGCTCGACACGATGTATGAAATCCCCTCGCAGTCCGAGGTGAGCAAAGTCGTGATCGAT
GAAAGCGTGATCGAAGGCAAGTCCAAGCCACTGTATATCTACGAAAACAGTGAGCCGGCTGCCAAGGCGGCGCCGGACGC
GTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.837	95.082	0.578
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.436	94.614	0.534