Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   SSPS47_RS19535 Genome accession   NZ_CP048397
Coordinates   4371159..4372571 (-) Length   470 a.a.
NCBI ID   WP_164252186.1    Uniprot ID   -
Organism   Streptomyces sp. S4.7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4366159..4377571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSPS47_RS19515 (SSPS47_19760) - 4367037..4367948 (-) 912 WP_164252183.1 A/G-specific adenine glycosylase -
  SSPS47_RS19520 (SSPS47_19765) - 4368102..4368866 (-) 765 WP_164252184.1 phosphatase PAP2 family protein -
  SSPS47_RS19525 (SSPS47_19770) - 4369048..4369890 (+) 843 WP_164252185.1 hypothetical protein -
  SSPS47_RS19530 (SSPS47_19775) disA 4369981..4371114 (-) 1134 WP_078075735.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  SSPS47_RS19535 (SSPS47_19780) radA/sms 4371159..4372571 (-) 1413 WP_164252186.1 DNA repair protein RadA Machinery gene
  SSPS47_RS19540 (SSPS47_19785) - 4372678..4374546 (+) 1869 WP_239064984.1 hypothetical protein -
  SSPS47_RS19545 (SSPS47_19790) - 4374572..4375390 (-) 819 WP_147878339.1 hypothetical protein -
  SSPS47_RS19550 (SSPS47_19795) - 4375430..4376368 (+) 939 WP_147878338.1 Ppx/GppA phosphatase family protein -
  SSPS47_RS19555 (SSPS47_19800) - 4376485..4377387 (+) 903 WP_239064985.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49451.56 Da        Isoelectric Point: 8.0026

>NTDB_id=368518 SSPS47_RS19535 WP_164252186.1 4371159..4372571(-) (radA/sms) [Streptomyces sp. S4.7]
MAVARTKSAKDRPSYRCTECGWTTVKWLGRCPECQAWGTVEEYGAPAVRTTAVGRVSTPALPIGQVDGRTATARSTGVNE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASSEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDQPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPTNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKIPAGMKVTEVADMGAALSVLPRRGRAEAPRDGEDRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=368518 SSPS47_RS19535 WP_164252186.1 4371159..4372571(-) (radA/sms) [Streptomyces sp. S4.7]
ATGGCTGTCGCCCGTACCAAATCCGCCAAGGACCGACCGTCCTACCGCTGTACCGAGTGCGGTTGGACGACCGTCAAGTG
GCTGGGCCGCTGCCCCGAGTGCCAGGCATGGGGCACCGTCGAGGAGTACGGCGCGCCCGCCGTACGGACGACGGCGGTCG
GCCGGGTCAGCACCCCGGCCCTCCCGATCGGCCAGGTCGACGGCCGCACGGCGACGGCGCGCTCGACGGGCGTAAACGAG
CTGGACCGCGTCCTCGGCGGCGGGCTCGTGCCGGGGGCCGTCGTGCTGGTGGCCGGTGAACCGGGCGTCGGCAAGTCCAC
GCTGCTCCTGGACGTCGCGGCGAAGGCGGCCTCCTCCGAGCACCGCACGCTCTATGTGACGGGCGAGGAGTCGGCGAGCC
AGGTGCGGCTGCGCGCGGACCGCATCAAGGCCATCGACGACCACCTCTATCTGGCGGCCGAGACGGACCTCTCGGCCGTC
CTCGGGCACCTCGACGCGGTCAAGCCGTCGCTGCTCGTCCTGGACTCCGTACAGACGGTGGCGTCGCCGGAGATCGACGG
CGCGCCCGGCGGCATGGCGCAGGTCCGGGAGGTCGCCGGCGCGCTCATCCGGGCCTCCAAGGAGCGGGGCATGTCCACCC
TGCTGGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGCCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCACGCGCGGCTGCGGCTGGTGCGGGGCGTCAAGAACAGGTACGGCACGACGGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGTCTCTTCCTCACCCGCCGGGACCAGCCGGTCC
CCGGCACCTGCCTGACGGTCACGCTCGAAGGCCGCCGCCCGCTGGTCGCCGAGGTGCAGGCGCTGACGGTCGACTCGCAG
ATCCCGTCCCCCCGCCGCACCACGTCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTCCTCGAACAGCGCGG
CCGGATCAGCGCCCTCGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCGGCCGCCGACC
TGGCGATCGCGCTGGCCCTGGCCTCGGCGGCGAGCGACACCCCCCTGCCGACGAACCTGGTCGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGAAGGGTCACGGGAGTCCAGCGCAGACTGGCCGAGGCGCACCGCCTGGGCTTCACGCACGCCCT
CGTCCCGACCGATCCGGGGAAGATCCCGGCCGGTATGAAGGTCACAGAAGTCGCCGACATGGGGGCGGCTCTGAGTGTGC
TTCCGCGCCGGGGTCGGGCGGAGGCCCCACGGGACGGCGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(15-42)

AAA domain (AAA_25)

(84-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.371

96.383

0.428
  radA Streptococcus mitis SK321

44.393

91.064

0.404
  radA Streptococcus pneumoniae Rx1

44.393

91.064

0.404
  radA Streptococcus pneumoniae D39

44.393

91.064

0.404
  radA Streptococcus pneumoniae R6

44.393

91.064

0.404
  radA Streptococcus pneumoniae TIGR4

44.393

91.064

0.404
  radA Streptococcus mitis NCTC 12261

44.393

91.064

0.404