Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FIU11_RS01755 Genome accession   NZ_CP040990
Coordinates   271152..271826 (+) Length   224 a.a.
NCBI ID   WP_232281756.1    Uniprot ID   -
Organism   Vibrio furnissii strain FDAARGOS_777     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 266152..276826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU11_RS01735 (FIU11_01735) - 266559..267221 (+) 663 WP_004728474.1 hypothetical protein -
  FIU11_RS01740 (FIU11_01740) - 267277..269586 (+) 2310 WP_004728472.1 Tex family protein -
  FIU11_RS01745 (FIU11_01745) - 269669..270139 (-) 471 WP_004728470.1 hypothetical protein -
  FIU11_RS01750 (FIU11_01750) bioH 270268..271038 (-) 771 WP_004728468.1 pimeloyl-ACP methyl ester esterase BioH -
  FIU11_RS01755 (FIU11_01755) comF 271152..271826 (+) 675 WP_232281756.1 phosphoribosyltransferase family protein Machinery gene
  FIU11_RS01760 (FIU11_01760) nfuA 271927..272514 (+) 588 WP_038152592.1 Fe-S biogenesis protein NfuA -
  FIU11_RS01765 (FIU11_01765) nudE 272660..273208 (+) 549 WP_004728462.1 ADP compounds hydrolase NudE -
  FIU11_RS01770 (FIU11_01770) cysQ 273232..274059 (+) 828 WP_004728460.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FIU11_RS01775 (FIU11_01775) - 274120..274878 (-) 759 WP_004728459.1 type II secretion system protein N -
  FIU11_RS01780 (FIU11_01780) - 274875..275384 (-) 510 WP_004728457.1 type II secretion system protein M -
  FIU11_RS01785 (FIU11_01785) gspL 275394..276605 (-) 1212 WP_004728456.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25160.28 Da        Isoelectric Point: 8.7090

>NTDB_id=368516 FIU11_RS01755 WP_232281756.1 271152..271826(+) (comF) [Vibrio furnissii strain FDAARGOS_777]
MFSWLAPACQLCGLALHAPTKPRLCTACLAWYAPTPRCARCGLPCESATAQCGQCLSTPPPWHQLVCVGDYRFPLSHSVH
QLKYQRQFWQARPLAALLAPRITTPAPLLTCVPLHWRRQLRRGFNQSDVLARQLAQHLGCEYDPQLFSRPHATVPQHGLD
KAQRRRNLNRAFVLNHVPCQQHVAIVDDVVTTGSTVRQLCNLLLEVGVKSLDIYCICRTPEPSD

Nucleotide


Download         Length: 675 bp        

>NTDB_id=368516 FIU11_RS01755 WP_232281756.1 271152..271826(+) (comF) [Vibrio furnissii strain FDAARGOS_777]
ATGTTTTCCTGGTTGGCACCCGCCTGCCAACTGTGCGGCCTAGCGCTACACGCGCCGACCAAACCCAGGCTGTGTACGGC
ATGTCTGGCGTGGTATGCCCCCACACCGCGCTGCGCTCGCTGCGGCCTGCCGTGTGAAAGTGCCACCGCGCAGTGCGGCC
AGTGCCTGAGCACACCGCCGCCGTGGCATCAGCTGGTCTGCGTGGGCGATTACCGCTTTCCTCTCAGCCACAGCGTGCAT
CAGCTCAAGTATCAGCGCCAGTTTTGGCAAGCACGGCCCCTGGCTGCATTGCTCGCGCCCAGAATCACCACGCCTGCGCC
GCTGCTCACGTGCGTGCCGTTGCATTGGCGTCGCCAACTGCGGCGCGGCTTCAATCAAAGTGATGTGTTGGCACGTCAGC
TCGCCCAGCATTTGGGCTGCGAGTATGACCCGCAGCTGTTTTCTCGCCCGCACGCCACGGTGCCACAACACGGCTTGGAC
AAAGCGCAGCGGCGACGCAACCTCAATCGTGCCTTTGTGTTAAACCACGTGCCGTGCCAGCAACACGTGGCGATTGTCGA
CGATGTCGTCACCACCGGCAGCACCGTACGGCAATTATGCAATTTACTACTTGAAGTGGGCGTCAAAAGCCTCGATATTT
ACTGTATCTGCCGCACTCCTGAACCAAGCGACTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(130-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

67.273

98.214

0.661
  comF Vibrio campbellii strain DS40M4

49.13

100

0.504
  comF Haemophilus influenzae 86-028NP

36.771

99.554

0.366
  comF Haemophilus influenzae Rd KW20

35.065

100

0.362

Multiple sequence alignment