Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GZS06_RS18380 | Genome accession | NZ_CP048376 |
| Coordinates | 3834673..3835113 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360895.1 | Uniprot ID | B7LFX5 |
| Organism | Escherichia coli strain 38 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3829673..3840113
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZS06_RS18360 (GZS06_18365) | aroP | 3830671..3832044 (+) | 1374 | WP_001347572.1 | aromatic amino acid transporter AroP | - |
| GZS06_RS18365 (GZS06_18370) | ampE | 3832087..3832941 (-) | 855 | WP_000172000.1 | beta-lactamase regulator AmpE | - |
| GZS06_RS18370 (GZS06_18375) | ampD | 3832938..3833489 (-) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GZS06_RS18375 (GZS06_18380) | nadC | 3833577..3834470 (+) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GZS06_RS18380 (GZS06_18385) | pilA | 3834673..3835113 (+) | 441 | WP_000360895.1 | prepilin peptidase-dependent pilin | Machinery gene |
| GZS06_RS18385 (GZS06_18390) | pilB | 3835123..3836508 (+) | 1386 | WP_001025174.1 | type II secretion system protein GspE | Machinery gene |
| GZS06_RS18390 (GZS06_18395) | hofC | 3836498..3837700 (+) | 1203 | WP_000157236.1 | protein transport protein HofC | - |
| GZS06_RS18395 (GZS06_18400) | guaC | 3837735..3838778 (-) | 1044 | WP_001217338.1 | GMP reductase | - |
| GZS06_RS23300 | - | 3838934..3838978 (-) | 45 | WP_120795372.1 | protein YacM | - |
| GZS06_RS18400 (GZS06_18405) | coaE | 3839003..3839623 (+) | 621 | WP_001269520.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15602.71 Da Isoelectric Point: 4.3927
>NTDB_id=368463 GZS06_RS18380 WP_000360895.1 3834673..3835113(+) (pilA) [Escherichia coli strain 38]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=368463 GZS06_RS18380 WP_000360895.1 3834673..3835113(+) (pilA) [Escherichia coli strain 38]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |