Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SJA_RS01460 Genome accession   NC_014006
Coordinates   315507..316064 (+) Length   185 a.a.
NCBI ID   WP_007686985.1    Uniprot ID   A0A4Q4J2S9
Organism   Sphingobium indicum UT26S     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 310507..321064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJA_RS01435 (SJA_C1-02940) ribH 310871..311293 (+) 423 WP_007686994.1 6,7-dimethyl-8-ribityllumazine synthase -
  SJA_RS01440 (SJA_C1-02950) - 311348..312430 (-) 1083 WP_013038923.1 alkene reductase -
  SJA_RS01445 (SJA_C1-02960) - 312634..313278 (+) 645 WP_007686990.1 COQ9 family protein -
  SJA_RS01450 (SJA_C1-02970) - 313367..313624 (+) 258 WP_007686988.1 FeoA family protein -
  SJA_RS01455 (SJA_C1-02980) - 313621..315480 (+) 1860 WP_013038925.1 ferrous iron transporter B -
  SJA_RS01460 (SJA_C1-02990) ssb 315507..316064 (+) 558 WP_007686985.1 single-stranded DNA-binding protein Machinery gene
  SJA_RS01465 (SJA_C1-03000) purH 316422..318011 (+) 1590 WP_013038926.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  SJA_RS01470 (SJA_C1-03020) - 318563..318904 (+) 342 WP_013038928.1 UrcA family protein -
  SJA_RS01475 (SJA_C1-03030) - 319050..320576 (+) 1527 WP_013038929.1 NAD(P)/FAD-dependent oxidoreductase -
  SJA_RS01480 (SJA_C1-03040) - 320582..321001 (+) 420 WP_007686977.1 GtrA family protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 18999.67 Da        Isoelectric Point: 5.0179

>NTDB_id=36823 SJA_RS01460 WP_007686985.1 315507..316064(+) (ssb) [Sphingobium indicum UT26S]
MAGSVNKVILVGNLGADPEVKSFQNGGKVCNLRIATSESWKDRMSGERKERTEWHSVAIFSEGLAGVAERFLRKGSKVYL
EGQLRTRKWQDQSGNDRYTTEVVLQGPGAVLTMLDGAPGGGGQGGGGRSQGGGDWSGGSSGFGGGDYDDFGGGGFGGGSG
RSSGGGRGSAGGPNFDNDLDDEVPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=36823 SJA_RS01460 WP_007686985.1 315507..316064(+) (ssb) [Sphingobium indicum UT26S]
ATGGCGGGTTCGGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCGCCGACCCGGAGGTCAAGAGCTTTCAGAATGGCGG
GAAGGTGTGCAACCTGCGGATCGCGACCTCCGAAAGCTGGAAGGACCGCATGTCGGGCGAGCGCAAGGAGCGCACCGAAT
GGCACAGCGTGGCGATCTTCTCCGAAGGGCTGGCCGGCGTGGCCGAACGCTTCCTGCGCAAGGGGTCGAAAGTCTATCTG
GAGGGCCAGCTCCGCACCCGCAAATGGCAGGACCAGTCGGGCAATGACCGCTACACCACCGAAGTGGTGCTGCAGGGTCC
GGGCGCGGTGCTGACCATGCTTGACGGCGCGCCGGGCGGCGGCGGCCAGGGCGGCGGTGGCCGCTCCCAGGGCGGCGGCG
ACTGGAGCGGCGGGTCGAGCGGCTTTGGCGGCGGCGATTATGACGATTTCGGCGGCGGCGGCTTCGGCGGCGGTTCCGGC
CGCTCCTCCGGCGGCGGGCGCGGCAGCGCGGGCGGGCCGAATTTCGACAATGACCTGGACGATGAAGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q4J2S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.492
  ssb Vibrio cholerae strain A1552

45.652

99.459

0.454

Multiple sequence alignment