Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FG381_RS04385 Genome accession   NZ_CP040882
Coordinates   1096647..1098032 (-) Length   461 a.a.
NCBI ID   WP_139687715.1    Uniprot ID   -
Organism   Sutterella faecalis strain KGMB03119     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1091647..1103032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FG381_RS04360 (FG381_04360) tig 1092484..1093836 (-) 1353 WP_139687711.1 trigger factor -
  FG381_RS04365 (FG381_04365) - 1094146..1094703 (+) 558 WP_139687712.1 hypothetical protein -
  FG381_RS04375 (FG381_04375) - 1094975..1095289 (+) 315 WP_139687713.1 hypothetical protein -
  FG381_RS12565 - 1095531..1096559 (+) 1029 WP_165697828.1 hypothetical protein -
  FG381_RS04385 (FG381_04385) radA 1096647..1098032 (-) 1386 WP_139687715.1 DNA repair protein RadA Machinery gene
  FG381_RS04390 (FG381_04390) alr 1098032..1099120 (-) 1089 WP_139687716.1 alanine racemase -
  FG381_RS04395 (FG381_04395) lplT 1099316..1100632 (+) 1317 WP_139687717.1 lysophospholipid transporter LplT -
  FG381_RS04400 (FG381_04400) - 1100957..1102324 (+) 1368 WP_139687718.1 IS110 family transposase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 49356.80 Da        Isoelectric Point: 7.1658

>NTDB_id=367978 FG381_RS04385 WP_139687715.1 1096647..1098032(-) (radA) [Sutterella faecalis strain KGMB03119]
MAKRDKVEFVCSECGGTTVKWQGQCPHCRAWNTLQEFKVPTGAAGRYGTDKRSGRGFVDTTGALQDLADVTAEEAPRVIT
GLSEFDRVMGGGLVRGGVSLIGGDPGIGKSTLLLQVMARLVAGGVRCVYVSGEESAGQIALRAQRLQLPLQGLQLMSEIE
LEHIEAVITEKKPEFVVIDSIQTLFSGALDSAPGSVSQVRECAARLTRIAKTTGATLFFVGHVTKDGALAGPRILEHIVD
TVLYFEGDTHSNFRLVRAFKNRFGAVNELGVFAMTDHGLRGVTNPSAIFLSEYKSNIPGSTVLVTQEGTRPLLVEIQALV
DETHSPAPRRLAVGVDNQRLAMLLAVLHRHAGVALFDQDVFVNAVGGVKISETAVDLAVLAAICSSWRDKPLERGLVIFG
EVGLAGEIRPAPRGQERLREAAKLGFSKALIPRANAPKQPIEGLEVIAVDRLADALAQIFP

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=367978 FG381_RS04385 WP_139687715.1 1096647..1098032(-) (radA) [Sutterella faecalis strain KGMB03119]
ATGGCGAAGCGCGATAAGGTTGAGTTTGTCTGCTCCGAATGCGGCGGCACGACGGTCAAGTGGCAGGGCCAGTGCCCGCA
CTGCCGGGCATGGAATACGCTTCAGGAATTCAAGGTTCCGACGGGTGCCGCAGGGCGCTACGGAACGGATAAGCGCTCGG
GACGCGGCTTTGTTGACACAACGGGAGCATTGCAGGACCTTGCCGACGTTACGGCTGAAGAGGCCCCGCGCGTCATTACG
GGGCTCTCGGAATTCGATCGCGTGATGGGGGGCGGCCTCGTCCGGGGCGGCGTTTCCCTTATCGGCGGCGACCCCGGCAT
CGGCAAATCCACATTGCTTCTTCAGGTGATGGCGCGGCTCGTTGCGGGCGGAGTTAGATGCGTCTACGTCTCGGGCGAAG
AGAGTGCGGGTCAGATTGCGCTTCGCGCTCAGCGCCTGCAGCTTCCGCTTCAGGGCCTGCAGCTCATGAGCGAAATTGAG
CTCGAGCATATTGAAGCGGTGATAACGGAGAAGAAGCCCGAATTCGTCGTGATCGACTCGATTCAGACGCTCTTTTCGGG
GGCGCTTGACAGCGCTCCGGGATCGGTTTCTCAGGTGCGCGAATGTGCGGCAAGGCTTACGCGCATTGCGAAAACCACCG
GCGCCACGCTCTTTTTCGTGGGGCACGTCACGAAGGACGGCGCGCTCGCCGGCCCCCGCATTCTCGAGCACATTGTCGAT
ACGGTGCTTTATTTCGAAGGCGACACCCATTCGAACTTCCGGCTCGTGCGCGCTTTCAAGAACCGCTTCGGCGCCGTGAA
CGAACTCGGCGTCTTCGCGATGACGGATCATGGGCTGAGAGGCGTGACGAATCCTTCGGCCATCTTCCTTTCGGAATACA
AGTCGAACATTCCCGGTTCCACCGTTCTCGTGACCCAGGAAGGCACCCGGCCGCTTCTTGTTGAAATTCAGGCGCTCGTC
GACGAAACGCATTCACCGGCGCCGCGGCGCCTCGCTGTCGGCGTCGACAACCAGAGGCTCGCGATGCTCCTTGCCGTTCT
GCACCGGCACGCCGGCGTGGCGCTCTTTGATCAGGACGTATTCGTCAATGCCGTGGGCGGCGTGAAGATTTCAGAAACCG
CCGTTGACCTTGCGGTTCTCGCGGCCATCTGCTCGAGCTGGCGCGACAAGCCCCTCGAACGCGGCCTCGTCATCTTCGGC
GAAGTCGGGCTCGCAGGCGAAATCCGGCCGGCGCCGAGAGGTCAGGAGCGGTTGAGAGAAGCCGCGAAGCTCGGATTTTC
AAAAGCGCTCATACCGCGCGCTAATGCGCCCAAGCAGCCGATTGAAGGGCTCGAGGTGATCGCTGTGGATCGTCTGGCGG
ACGCGCTCGCTCAGATTTTCCCTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(86-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.892

100

0.499
  radA Streptococcus mitis SK321

45.455

100

0.456
  radA Streptococcus pneumoniae Rx1

45.161

100

0.456
  radA Streptococcus pneumoniae D39

45.161

100

0.456
  radA Streptococcus pneumoniae R6

45.161

100

0.456
  radA Streptococcus pneumoniae TIGR4

45.161

100

0.456
  radA Streptococcus mitis NCTC 12261

45.119

100

0.451

Multiple sequence alignment