Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FHQ07_RS05670 Genome accession   NZ_CP040871
Coordinates   1165383..1166783 (+) Length   466 a.a.
NCBI ID   WP_139715893.1    Uniprot ID   A0A5B7ZNT6
Organism   Thermomonas aquatica strain SY21     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1160383..1171783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHQ07_RS05655 (FHQ07_05655) sucD 1161525..1162400 (-) 876 WP_139715890.1 succinate--CoA ligase subunit alpha -
  FHQ07_RS05660 (FHQ07_05660) sucC 1162424..1163593 (-) 1170 WP_139715891.1 ADP-forming succinate--CoA ligase subunit beta -
  FHQ07_RS05665 (FHQ07_05665) - 1163713..1165311 (+) 1599 WP_139715892.1 ATP-binding protein -
  FHQ07_RS05670 (FHQ07_05670) pilR 1165383..1166783 (+) 1401 WP_139715893.1 sigma-54 dependent transcriptional regulator Regulator
  FHQ07_RS14515 - 1167079..1167168 (+) 90 Protein_1110 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FHQ07_RS14465 - 1167610..1167747 (+) 138 Protein_1111 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FHQ07_RS05685 (FHQ07_05685) - 1168126..1169988 (+) 1863 WP_139715896.1 hypothetical protein -
  FHQ07_RS05690 (FHQ07_05690) rfbF 1170107..1170877 (+) 771 WP_139715897.1 glucose-1-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50225.59 Da        Isoelectric Point: 7.8000

>NTDB_id=367747 FHQ07_RS05670 WP_139715893.1 1165383..1166783(+) (pilR) [Thermomonas aquatica strain SY21]
MTSPRSNQACALIVDDERDIRELLVLTLGRMGLRCDTASSLSDARSLLRQNRYALCLTDMRLADGSGVDLVREIAQLYSE
TPVAMITAFGNQDAAVGALKAGAFDFVSKPVDLGVLRGLVQHALKLGSEARKGPANAPDPAATRLLGASPAMADLRATLA
KVARSQAPVYIAGESGVGKELVARTIHAEGARNAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAEGGT
LFLDEVAELPLPMQVKLLRAIQEKSVRPVGANSEVAVDVRILSATHKNLAALVDEGRFRHDLYYRINVIELRVPPLRERR
EDLPLLADAVLARLAVAQHRPKPLLHADAADALSRYNFPGNVRELENILERAFALADDDGIRAADLRLPEARPSAPAQAA
AAQLDPSKIDPRESAASALPSFIEEIERKAIEQALTDNRYNKTRAAAQLGITFRALRYKLKKLGIE

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=367747 FHQ07_RS05670 WP_139715893.1 1165383..1166783(+) (pilR) [Thermomonas aquatica strain SY21]
ATGACGTCCCCCCGTAGCAACCAGGCCTGCGCCCTGATCGTCGATGACGAGCGCGACATCCGCGAATTGCTGGTGCTCAC
CCTTGGCCGCATGGGCCTGCGCTGCGATACCGCCTCCTCCCTGTCGGATGCCCGCAGCCTGCTGCGGCAGAACCGCTACG
CGCTGTGCCTGACCGACATGCGCCTCGCCGACGGCTCCGGCGTGGACCTGGTGCGCGAGATCGCCCAGCTCTATTCGGAA
ACCCCGGTGGCGATGATCACCGCCTTCGGCAACCAGGATGCCGCGGTCGGCGCGCTCAAGGCCGGCGCCTTCGACTTCGT
CAGCAAGCCGGTCGACCTGGGCGTGCTGCGCGGGCTGGTGCAGCACGCATTGAAGCTGGGCAGCGAAGCGCGCAAGGGCC
CCGCGAATGCGCCCGACCCGGCCGCCACCCGCCTGCTGGGCGCCTCGCCGGCGATGGCCGACCTGCGCGCGACCCTGGCC
AAGGTGGCGCGCAGCCAGGCGCCGGTCTACATCGCCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCA
TGCCGAGGGCGCGCGCAATGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGT
TCTTCGGCCACAAGAAGGGCAGCTTCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCGGCCGAAGGCGGCACC
CTGTTCCTCGACGAAGTGGCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGAAATCGGTGCG
CCCGGTCGGCGCCAACAGCGAAGTGGCGGTCGACGTGCGCATCCTGTCGGCCACCCACAAGAACCTGGCCGCGCTGGTCG
ACGAAGGCCGCTTCCGCCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGGGTGCCGCCGTTGCGCGAACGCCGC
GAAGACCTGCCCCTGCTCGCCGACGCGGTGCTGGCCCGGCTCGCCGTCGCCCAGCACCGGCCCAAGCCGCTGCTGCACGC
GGATGCCGCGGACGCCCTGTCCCGCTACAACTTCCCGGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGCGCCTTCG
CCCTCGCCGACGACGACGGCATCCGCGCCGCCGACCTGCGCCTGCCGGAAGCGCGCCCCAGCGCCCCGGCCCAGGCCGCC
GCTGCGCAACTGGATCCCAGCAAGATCGACCCGCGCGAATCCGCCGCCAGCGCCCTGCCCAGCTTCATCGAGGAAATCGA
ACGCAAGGCGATCGAGCAGGCGCTGACCGACAACCGCTACAACAAGACCCGCGCCGCCGCCCAGCTCGGCATCACCTTCC
GCGCGCTGCGTTACAAGCTGAAGAAGCTCGGCATCGAATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(146-311)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(12-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7ZNT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.377

97.854

0.62
  pilR Acinetobacter baumannii strain A118

48.394

100

0.485

Multiple sequence alignment