Detailed information NTG0367690

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FEE38_RS10085
• Genome accession: NZ_CP040861
• Coordinates: 1922162..1922962 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Xen39
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1917162..1927962

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FEE38_RS10050 (FEE38_09985)	gspH	1917318..1917833 (+)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-
FEE38_RS10055 (FEE38_09990)	gspI	1917830..1918195 (+)	366	WP_117096269.1	type II secretion system minor pseudopilin GspI	-
FEE38_RS10060 (FEE38_09995)	gspJ	1918192..1918788 (+)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
FEE38_RS10065 (FEE38_10000)	gspK	1918785..1919771 (+)	987	WP_117096270.1	type II secretion system minor pseudopilin GspK	-
FEE38_RS10070 (FEE38_10005)	gspL	1919758..1920951 (+)	1194	WP_117096271.1	type II secretion system protein GspL	-
FEE38_RS10075 (FEE38_10010)	-	1920944..1921429 (+)	486	WP_004151943.1	type II secretion system protein M	-
FEE38_RS10080 (FEE38_10015)	-	1921419..1922165 (+)	747	WP_004145897.1	type II secretion system protein N	-
FEE38_RS10085 (FEE38_10020)	pilD	1922162..1922962 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
FEE38_RS10090 (FEE38_10025)	hrpB	1923010..1925439 (-)	2430	WP_163589167.1	ATP-dependent helicase HrpB	-
FEE38_RS10095 (FEE38_10030)	thpR	1925512..1926048 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
FEE38_RS10100 (FEE38_10035)	sfsA	1926048..1926764 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
FEE38_RS10105 (FEE38_10040)	dksA	1926927..1927382 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=367690 FEE38_RS10085 WP_002888947.1 1922162..1922962(+) (pilD) [Klebsiella pneumoniae strain Xen39]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=367690 FEE38_RS10085 WP_002888947.1 1922162..1922962(+) (pilD) [Klebsiella pneumoniae strain Xen39]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425