Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FEE39_RS08890 | Genome accession | NZ_CP040854 |
| Coordinates | 1853908..1854426 (+) | Length | 172 a.a. |
| NCBI ID | WP_023598997.1 | Uniprot ID | A0A7D9N424 |
| Organism | Lactobacillus johnsonii strain G2A | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1848908..1859426
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEE39_RS08875 (FEE39_08980) | gyrB | 1848930..1850897 (+) | 1968 | WP_086874536.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| FEE39_RS08880 (FEE39_08985) | gyrA | 1850908..1853391 (+) | 2484 | WP_023598996.1 | DNA gyrase subunit A | - |
| FEE39_RS08885 (FEE39_08990) | rpsF | 1853578..1853874 (+) | 297 | WP_004896331.1 | 30S ribosomal protein S6 | - |
| FEE39_RS08890 (FEE39_08995) | ssb | 1853908..1854426 (+) | 519 | WP_023598997.1 | single-stranded DNA-binding protein | Machinery gene |
| FEE39_RS08895 (FEE39_09000) | rpsR | 1854451..1854687 (+) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| FEE39_RS08900 (FEE39_09005) | - | 1854781..1855698 (+) | 918 | WP_011161252.1 | magnesium transporter CorA family protein | - |
| FEE39_RS08905 (FEE39_09010) | - | 1855806..1857824 (+) | 2019 | WP_023598998.1 | DHH family phosphoesterase | - |
| FEE39_RS08910 (FEE39_09015) | rplI | 1857836..1858291 (+) | 456 | WP_003651632.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18570.30 Da Isoelectric Point: 4.7531
>NTDB_id=367657 FEE39_RS08890 WP_023598997.1 1853908..1854426(+) (ssb) [Lactobacillus johnsonii strain G2A]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=367657 FEE39_RS08890 WP_023598997.1 1853908..1854426(+) (ssb) [Lactobacillus johnsonii strain G2A]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACGTCAAAAGGTTCATTAGTTGGTATTCAAGGCCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAAAATCGTCAGACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCTCCAAGCATGAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCAGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACGTCAAAAGGTTCATTAGTTGGTATTCAAGGCCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAAAATCGTCAGACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCTCCAAGCATGAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCAGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.069 |
100 |
0.628 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.568 |
100 |
0.517 |