Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   GYN04_RS03465 Genome accession   NZ_CP048254
Coordinates   672668..673345 (+) Length   225 a.a.
NCBI ID   WP_003688801.1    Uniprot ID   Q5F8S9
Organism   Neisseria gonorrhoeae strain CT530     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 667668..678345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN04_RS03445 (GYN04_03385) leuD 668483..669124 (-) 642 WP_010357988.1 3-isopropylmalate dehydratase small subunit -
  GYN04_RS03450 (GYN04_03390) - 669186..669440 (-) 255 WP_003688807.1 hypothetical protein -
  GYN04_RS03455 (GYN04_03395) leuC 669535..670944 (-) 1410 WP_003691266.1 3-isopropylmalate dehydratase large subunit -
  GYN04_RS03460 (GYN04_03400) gshA 671196..672545 (+) 1350 WP_003688804.1 glutamate--cysteine ligase -
  GYN04_RS11750 - 672519..672641 (-) 123 WP_255294323.1 hypothetical protein -
  GYN04_RS03465 (GYN04_03405) ysxA/radC 672668..673345 (+) 678 WP_003688801.1 DNA repair protein RadC Machinery gene
  GYN04_RS03470 (GYN04_03410) - 673418..674143 (+) 726 WP_003688798.1 epoxyqueuosine reductase QueH -
  GYN04_RS03475 (GYN04_03415) - 674295..675575 (+) 1281 WP_010360146.1 CAP domain-containing protein -
  GYN04_RS03480 (GYN04_03420) hflX 675581..676759 (+) 1179 WP_025455991.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25108.88 Da        Isoelectric Point: 5.1699

>NTDB_id=367542 GYN04_RS03465 WP_003688801.1 672668..673345(+) (ysxA/radC) [Neisseria gonorrhoeae strain CT530]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILEEELQEEITLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=367542 GYN04_RS03465 WP_003688801.1 672668..673345(+) (ysxA/radC) [Neisseria gonorrhoeae strain CT530]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGGCCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGCGATGC
CGAACTTTTGGCAATCCTTTTACGCGTCGGGACGCGCGGGATGAGCGCGGTCGATTTGGCGCGCTACCTATTGCAGGAGT
TCGGCAGCTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTCGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGAGGAAGAATTGCAGGAAGAAATTACCTTATCCGATCCCGA
TACCGTTGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCCATGTCGCTGGTTGATGTTTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F8S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.719

100

0.382
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378