Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   GYN04_RS03275 Genome accession   NZ_CP048254
Coordinates   637043..638287 (+) Length   414 a.a.
NCBI ID   WP_003688869.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT530     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 632043..643287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN04_RS03250 (GYN04_03200) - 632612..634072 (-) 1461 WP_010360128.1 site-specific DNA-methyltransferase -
  GYN04_RS03255 (GYN04_03205) - 634306..634758 (-) 453 WP_250328400.1 site-specific DNA-methyltransferase -
  GYN04_RS03260 (GYN04_03210) truB 634976..635896 (-) 921 WP_003697163.1 tRNA pseudouridine(55) synthase TruB -
  GYN04_RS03265 (GYN04_03215) - 635954..636478 (-) 525 WP_003688872.1 hypothetical protein -
  GYN04_RS03270 (GYN04_03220) rbfA 636489..636860 (-) 372 WP_003692998.1 30S ribosome-binding factor RbfA -
  GYN04_RS03275 (GYN04_03225) clpX 637043..638287 (+) 1245 WP_003688869.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GYN04_RS03280 (GYN04_03230) - 638394..639587 (-) 1194 WP_003688867.1 aspartate aminotransferase family protein -
  GYN04_RS03285 (GYN04_03235) - 639686..639895 (-) 210 WP_082286575.1 hypothetical protein -
  GYN04_RS03290 (GYN04_03240) - 639992..640492 (+) 501 WP_010357954.1 hypothetical protein -
  GYN04_RS03295 (GYN04_03245) - 640577..641131 (+) 555 WP_003688863.1 hypothetical protein -
  GYN04_RS03300 (GYN04_03250) - 641145..641345 (+) 201 WP_003688861.1 hypothetical protein -
  GYN04_RS03305 - 641476..641582 (+) 107 Protein_649 IS5/IS1182 family transposase -
  GYN04_RS03310 (GYN04_03255) - 641696..643084 (-) 1389 WP_003688859.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44833.21 Da        Isoelectric Point: 4.8622

>NTDB_id=367541 GYN04_RS03275 WP_003688869.1 637043..638287(+) (clpX) [Neisseria gonorrhoeae strain CT530]
MSNENRTCSFCGKSKSHVKHLIEGENAFICDECVSNCLEILYEGDNGGTPPENAGGEPEESGKLPTPAEIVANLDDYVIG
QGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQ
IITKLLGKCDFDVEKAQHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDT
ANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDA
LINILTEPKNALVKQYQALFGIENVGLEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKA
VIEEGREPELVFES

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=367541 GYN04_RS03275 WP_003688869.1 637043..638287(+) (clpX) [Neisseria gonorrhoeae strain CT530]
ATGTCCAACGAAAACCGTACCTGTTCCTTTTGCGGAAAATCCAAATCACACGTCAAACATTTGATTGAGGGCGAAAACGC
CTTTATCTGCGACGAATGCGTCTCAAACTGCCTCGAAATATTGTACGAAGGCGACAACGGCGGCACGCCTCCGGAAAATG
CCGGAGGGGAGCCGGAAGAATCCGGCAAACTGCCCACGCCCGCCGAAATCGTTGCCAACCTCGACGATTATGTCATCGGG
CAGGGGCAGGCGAAAAAGGCGCTGGCGGTTGCGGTTTACAACCATTACAAACGCCTGCGCCACCCGAAAGCCGACGGCGG
TGTCGAATTGTCGAAATCCAACATCCTGCTTATCGGCCCGACCGGATCGGGTAAAACGCTGTTGGCGCAATCTTTGGCAC
GCAAACTGGACGTGCCGTTCGTGATGGCGGATGCGACCACGCTGACCGAAGCCGGCTATGTCGGCGAAGATGTCGAACAA
ATCATTACCAAACTGTTGGGCAAATGCGATTTCGATGTCGAAAAAGCCCAGCACGGCATTGTCTATATTGACGAAATTGA
CAAAATTTCGCGTAAAAGCGACAACCCGTCCATCACGCGCGACGTGTCCGGCGAAGGCGTGCAGCAAGCCTTGCTGAAAC
TGATTGAAGGTACGGTGGCAAGCGTTCCGCCCCAAGGCGGACGCAAGCATCCGAATCAGGAATTTATCAACGTTGATACC
GCCAACATCCTGTTTATCTGCGGCGGCGCGTTTGCAGGCTTGGAAAAAGTGATTCGCCAGCGCACCGAGAAAGGTGGTAT
CGGTTTCGGCGCGTCCGTTCACAGCAAGGACGAAAATGCCGGCATTACCAAGCTGTTCGGCATCGTCGAACCGGAAGATT
TAATCAAATTCGGCCTGATTCCGGAATTAATCGGACGTTTGCCCGTGATTGCAACTTTAGAAGAACTGGATGAGGACGCG
CTGATTAATATTTTAACCGAGCCGAAAAACGCTTTGGTCAAGCAGTATCAAGCCTTGTTCGGCATAGAAAACGTCGGGTT
GGAATTTGAAGAAGGCGCATTGCGTTCCATCGCGCGGCAGGCAATGGAACGCAAAACCGGCGCGCGCGGCCTGCGTTCCA
TCGTCGAACGCTGCCTGCTCGATACGATGTACCGCCTGCCCGATTTGCAAGGCTTGAAAAAAGTGGTGGTCGGCAAGGCA
GTCATCGAAGAGGGCAGGGAACCGGAATTGGTGTTCGAGTCCTGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(112-310)

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(316-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.28

100

0.563
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.448

99.758

0.553