Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   GYN04_RS02320 Genome accession   NZ_CP048254
Coordinates   450816..451427 (+) Length   203 a.a.
NCBI ID   WP_250328389.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT530     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 445816..456427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN04_RS02295 (GYN04_02295) - 446317..446649 (+) 333 WP_047926879.1 hypothetical protein -
  GYN04_RS02300 (GYN04_02300) - 446976..447485 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  GYN04_RS02305 (GYN04_02305) - 447717..448298 (-) 582 WP_003690895.1 superoxide dismutase -
  GYN04_RS02310 (GYN04_02310) dnaB 448462..449865 (+) 1404 WP_012503477.1 replicative DNA helicase -
  GYN04_RS02315 (GYN04_02315) pilH 450122..450784 (+) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GYN04_RS02320 (GYN04_02320) pilV 450816..451427 (+) 612 WP_250328389.1 type IV pilus modification protein PilV Regulator
  GYN04_RS02325 (GYN04_02325) pilJ 451424..452353 (+) 930 WP_250328390.1 PilW family protein Machinery gene
  GYN04_RS02330 (GYN04_02330) pilK 452332..452943 (+) 612 WP_123768185.1 pilus assembly protein Machinery gene
  GYN04_RS02335 (GYN04_02335) pilL 452945..453418 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  GYN04_RS02340 (GYN04_02340) - 453488..453796 (-) 309 WP_025456241.1 AzlD family protein -
  GYN04_RS02345 (GYN04_02345) - 453793..454502 (-) 710 Protein_458 AzlC family ABC transporter permease -
  GYN04_RS02350 (GYN04_02350) dut 454668..455120 (+) 453 WP_003687923.1 dUTP diphosphatase -
  GYN04_RS02355 (GYN04_02355) dapC 455198..456385 (+) 1188 WP_123771553.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22129.17 Da        Isoelectric Point: 4.6302

>NTDB_id=367533 GYN04_RS02320 WP_250328389.1 450816..451427(+) (pilV) [Neisseria gonorrhoeae strain CT530]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDLDSNKKN
YSLYMGKQTPLAVDGKFTLDAEKSKAQLAEEQLKRFSYELKNALPDAVGIHYAVCKDSSGKEPTLSDSGVFSSNCDDEAN
GDTLIKVLWVNDSAGDSDIARTNFEVSGGNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=367533 GYN04_RS02320 WP_250328389.1 450816..451427(+) (pilV) [Neisseria gonorrhoeae strain CT530]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACGGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTTGGATAGCAACAAGAAAAAC
TATAGTCTTTACATGGGAAAACAGACACCATTAGCTGTGGATGGTAAGTTTACGCTTGATGCCGAGAAAAGTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGTCGGTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTAAAGAGCCGACATTGTCCGACAGCGGTGTTTTTTCTTCAAATTGCGACGATGAGGCAAAC
GGGGATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCGTACGAATTTTGAGGTGAG
CGGCGGCAATATCGTATATACTTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

85.99

100

0.877
  pilV/pilI Neisseria gonorrhoeae MS11

82.266

100

0.823

Multiple sequence alignment