Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | SLIT_RS13155 | Genome accession | NC_013959 |
| Coordinates | 2676735..2678096 (-) | Length | 453 a.a. |
| NCBI ID | WP_013030756.1 | Uniprot ID | D5CNT7 |
| Organism | Sideroxydans lithotrophicus ES-1 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2671735..2683096
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SLIT_RS13140 (Slit_2630) | - | 2671821..2672969 (-) | 1149 | WP_013030753.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| SLIT_RS13145 (Slit_2631) | - | 2673102..2675942 (-) | 2841 | WP_013030754.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| SLIT_RS13150 (Slit_2632) | ampD | 2676202..2676738 (-) | 537 | WP_013030755.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| SLIT_RS13155 (Slit_2633) | pilR | 2676735..2678096 (-) | 1362 | WP_013030756.1 | sigma-54 dependent transcriptional regulator | Regulator |
| SLIT_RS13160 (Slit_2634) | - | 2678086..2679672 (-) | 1587 | WP_041421377.1 | nitrogen regulation protein NR(II) | - |
| SLIT_RS13165 (Slit_2635) | - | 2679717..2679935 (-) | 219 | WP_013030758.1 | PP0621 family protein | - |
| SLIT_RS13170 (Slit_2636) | - | 2680139..2680357 (-) | 219 | WP_013030759.1 | hypothetical protein | - |
| SLIT_RS13175 (Slit_2637) | - | 2680707..2682164 (+) | 1458 | WP_013030760.1 | hypothetical protein | - |
| SLIT_RS13180 (Slit_2638) | - | 2682157..2682354 (+) | 198 | WP_013030761.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 453 a.a. Molecular weight: 50348.86 Da Isoelectric Point: 5.1858
>NTDB_id=36746 SLIT_RS13155 WP_013030756.1 2676735..2678096(-) (pilR) [Sideroxydans lithotrophicus ES-1]
MTLRIVNVPRVLVVDDEADILELLELALVRMGLEVVRASNVRQAKECLDSGSFDLCLTDMRMPDGEGLEVVRYISERGLD
VPVAVITAHGNLENAVAVLKAGAFDYLSKPVALDQLRTLVTSALRLPASNVAIKEGENTLLGSSPAMVQARELIGRVARS
QAPVHISGESGSGKELAACLIVEKSARRDQPFIAVNCGAIPENLMESEFFGYRKGAFTGADKDKEGFFQAANQGTLFLDE
VADLPMMMQVKLLRAIQEKKVRRIGATQEEPVDVRILSATHHDLAKCVQQGEFRQDLYYRLNVISLQMPSLREMREDIPE
IACRILERLRGSSNAKFSAQALNELARYDFPGNVRELENVIERALALCQNDVITPADLQLMPVQSAQVEDRSEGAGKYPL
TDYLDRIEREIILEALHQTHFNRTSAAKILGVTFRALRYRMERLSITDKDKVD
MTLRIVNVPRVLVVDDEADILELLELALVRMGLEVVRASNVRQAKECLDSGSFDLCLTDMRMPDGEGLEVVRYISERGLD
VPVAVITAHGNLENAVAVLKAGAFDYLSKPVALDQLRTLVTSALRLPASNVAIKEGENTLLGSSPAMVQARELIGRVARS
QAPVHISGESGSGKELAACLIVEKSARRDQPFIAVNCGAIPENLMESEFFGYRKGAFTGADKDKEGFFQAANQGTLFLDE
VADLPMMMQVKLLRAIQEKKVRRIGATQEEPVDVRILSATHHDLAKCVQQGEFRQDLYYRLNVISLQMPSLREMREDIPE
IACRILERLRGSSNAKFSAQALNELARYDFPGNVRELENVIERALALCQNDVITPADLQLMPVQSAQVEDRSEGAGKYPL
TDYLDRIEREIILEALHQTHFNRTSAAKILGVTFRALRYRMERLSITDKDKVD
Nucleotide
Download Length: 1362 bp
>NTDB_id=36746 SLIT_RS13155 WP_013030756.1 2676735..2678096(-) (pilR) [Sideroxydans lithotrophicus ES-1]
ATGACTCTTAGAATAGTAAATGTCCCTCGCGTACTGGTTGTGGATGATGAGGCGGATATATTGGAATTGCTGGAGTTGGC
TCTGGTGCGTATGGGTCTGGAGGTTGTGCGTGCAAGCAATGTAAGGCAAGCCAAAGAATGCTTGGACAGCGGAAGTTTCG
ATCTTTGTCTCACTGATATGCGGATGCCAGACGGAGAAGGGCTGGAGGTTGTTCGTTATATCTCCGAGCGTGGTTTGGAT
GTGCCGGTGGCCGTGATCACTGCCCATGGCAATCTCGAAAATGCAGTAGCTGTTCTCAAGGCGGGGGCATTTGATTATCT
TTCCAAGCCGGTAGCATTGGATCAGTTGCGCACGCTGGTCACATCTGCGCTCAGATTGCCTGCGTCCAATGTCGCGATAA
AGGAGGGGGAAAACACTTTGCTGGGGAGTTCTCCAGCCATGGTGCAGGCACGCGAGCTGATTGGGCGCGTGGCGCGCAGT
CAGGCGCCGGTTCATATTAGCGGTGAATCCGGCAGCGGCAAGGAATTGGCCGCATGTTTGATTGTTGAGAAGAGTGCGCG
TCGCGATCAGCCGTTTATTGCAGTGAACTGCGGGGCGATTCCCGAGAATTTGATGGAAAGCGAGTTTTTTGGCTATCGCA
AAGGGGCGTTTACCGGTGCGGACAAGGACAAGGAGGGGTTCTTTCAGGCTGCGAATCAGGGCACGTTGTTTCTGGACGAA
GTGGCAGATCTGCCGATGATGATGCAGGTCAAATTATTACGAGCAATCCAGGAAAAGAAAGTGCGCCGCATCGGTGCAAC
TCAGGAAGAGCCGGTGGATGTTCGAATTCTCAGTGCCACCCACCATGATTTGGCTAAATGCGTCCAGCAAGGTGAGTTCA
GGCAAGATCTGTACTATCGCTTGAATGTCATTTCATTGCAGATGCCGTCTTTGCGGGAGATGCGCGAGGATATACCGGAG
ATTGCATGCCGAATATTGGAGCGGTTGCGAGGAAGCTCGAATGCCAAATTTTCAGCGCAGGCATTGAATGAGCTTGCGCG
ATACGATTTCCCCGGAAATGTGCGCGAGTTGGAGAATGTTATCGAACGAGCATTGGCGTTGTGCCAGAACGATGTCATTA
CACCCGCAGACTTGCAGTTGATGCCAGTGCAGTCGGCGCAAGTGGAGGATAGGAGTGAGGGGGCTGGCAAGTATCCGCTT
ACCGACTATCTGGATCGAATCGAACGCGAAATCATTCTGGAAGCGCTGCATCAGACCCATTTTAACCGTACATCTGCAGC
CAAAATACTGGGAGTGACGTTTCGTGCATTGCGTTACCGCATGGAACGGCTATCCATTACCGACAAGGATAAAGTCGATT
GA
ATGACTCTTAGAATAGTAAATGTCCCTCGCGTACTGGTTGTGGATGATGAGGCGGATATATTGGAATTGCTGGAGTTGGC
TCTGGTGCGTATGGGTCTGGAGGTTGTGCGTGCAAGCAATGTAAGGCAAGCCAAAGAATGCTTGGACAGCGGAAGTTTCG
ATCTTTGTCTCACTGATATGCGGATGCCAGACGGAGAAGGGCTGGAGGTTGTTCGTTATATCTCCGAGCGTGGTTTGGAT
GTGCCGGTGGCCGTGATCACTGCCCATGGCAATCTCGAAAATGCAGTAGCTGTTCTCAAGGCGGGGGCATTTGATTATCT
TTCCAAGCCGGTAGCATTGGATCAGTTGCGCACGCTGGTCACATCTGCGCTCAGATTGCCTGCGTCCAATGTCGCGATAA
AGGAGGGGGAAAACACTTTGCTGGGGAGTTCTCCAGCCATGGTGCAGGCACGCGAGCTGATTGGGCGCGTGGCGCGCAGT
CAGGCGCCGGTTCATATTAGCGGTGAATCCGGCAGCGGCAAGGAATTGGCCGCATGTTTGATTGTTGAGAAGAGTGCGCG
TCGCGATCAGCCGTTTATTGCAGTGAACTGCGGGGCGATTCCCGAGAATTTGATGGAAAGCGAGTTTTTTGGCTATCGCA
AAGGGGCGTTTACCGGTGCGGACAAGGACAAGGAGGGGTTCTTTCAGGCTGCGAATCAGGGCACGTTGTTTCTGGACGAA
GTGGCAGATCTGCCGATGATGATGCAGGTCAAATTATTACGAGCAATCCAGGAAAAGAAAGTGCGCCGCATCGGTGCAAC
TCAGGAAGAGCCGGTGGATGTTCGAATTCTCAGTGCCACCCACCATGATTTGGCTAAATGCGTCCAGCAAGGTGAGTTCA
GGCAAGATCTGTACTATCGCTTGAATGTCATTTCATTGCAGATGCCGTCTTTGCGGGAGATGCGCGAGGATATACCGGAG
ATTGCATGCCGAATATTGGAGCGGTTGCGAGGAAGCTCGAATGCCAAATTTTCAGCGCAGGCATTGAATGAGCTTGCGCG
ATACGATTTCCCCGGAAATGTGCGCGAGTTGGAGAATGTTATCGAACGAGCATTGGCGTTGTGCCAGAACGATGTCATTA
CACCCGCAGACTTGCAGTTGATGCCAGTGCAGTCGGCGCAAGTGGAGGATAGGAGTGAGGGGGCTGGCAAGTATCCGCTT
ACCGACTATCTGGATCGAATCGAACGCGAAATCATTCTGGAAGCGCTGCATCAGACCCATTTTAACCGTACATCTGCAGC
CAAAATACTGGGAGTGACGTTTCGTGCATTGCGTTACCGCATGGAACGGCTATCCATTACCGACAAGGATAAAGTCGATT
GA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
58.409 |
97.13 |
0.567 |
| pilR | Acinetobacter baumannii strain A118 |
45.652 |
100 |
0.464 |