Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FHI56_RS10065 Genome accession   NZ_CP040804
Coordinates   1946597..1948411 (-) Length   604 a.a.
NCBI ID   WP_045769270.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1941597..1953411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS10045 (FHI56_10045) - 1942649..1943326 (-) 678 WP_038675394.1 response regulator transcription factor -
  FHI56_RS10050 (FHI56_10050) - 1943328..1943950 (-) 623 Protein_1748 GTP pyrophosphokinase family protein -
  FHI56_RS10055 (FHI56_10055) - 1944098..1944721 (-) 624 WP_045769268.1 GNAT family N-acetyltransferase -
  FHI56_RS10060 (FHI56_10060) rcrQ 1944829..1946607 (-) 1779 WP_045769269.1 ABC transporter ATP-binding protein Regulator
  FHI56_RS10065 (FHI56_10065) rcrP 1946597..1948411 (-) 1815 WP_045769270.1 ABC transporter ATP-binding protein Regulator
  FHI56_RS10070 (FHI56_10070) rcrR 1948415..1948858 (-) 444 WP_002885568.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  FHI56_RS10075 (FHI56_10075) - 1949044..1949454 (-) 411 WP_014633541.1 peptide deformylase -
  FHI56_RS10080 (FHI56_10080) - 1949612..1950946 (-) 1335 WP_235289496.1 YfhO family protein -
  FHI56_RS10085 (FHI56_10085) gdhA 1951434..1952786 (-) 1353 WP_045772168.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67049.68 Da        Isoelectric Point: 6.1407

>NTDB_id=367374 FHI56_RS10065 WP_045769270.1 1946597..1948411(-) (rcrP) [Streptococcus salivarius strain LAB813]
MFKIFKRLTTKELIMIVLVVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQLVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSLALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKISGAMENKVHLFSDMVVYSSYAMQVVMGFMMMIIVFFLLP
RAVVAAGRINEVLDTQSSVSYPENSSEKSNEVGTVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNNPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQDMTKLIVAQRISTIMDA
DQILVLNQGKVVGQGTHKELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=367374 FHI56_RS10065 WP_045769270.1 1946597..1948411(-) (rcrP) [Streptococcus salivarius strain LAB813]
ATGTTTAAAATTTTTAAACGTTTGACGACAAAAGAGTTAATCATGATTGTCTTAGTGGTGATTTTTGTTTGCTTGAACGT
CTATTTAAACTTGAAAATTCCAGACTATATGTCTGATATTACGACACTCTTATCAACTAAGGGAACTAAAGCGTCGGATA
TTTTTGCCTGGAATACAGATGCCCCAGGGATGCGAATGCTTTTAATGTCATTTGCAGGCTTTATGGCCTCTGTAGTTGTT
GGTTTCTTAGCTGCCAGAACAGCGGCAAGTTTTACCACCCGTCTTCGTGATGATATCTTCCATCAGGTTCTAGATTTTTC
GGATGCTGAGATTAAGAAATTCTCAATTCCTAGTCTTTTGACCCGTACGACAAATGATATTACCCAATTGCAGCTGGTAC
TTACCATGGGGTTACAGGTTATTACACAGGGGCCTATCATGGCCATTTGGGCGATTACAAAGATTGCCGATAAAAATGGG
AACTGGCTCCTTGCCTTGCTTGTCGCTGTGGCAGTGATTGCCATTCTCATGCTCTTCCTCTTGATTATGGTTATGCCTAA
GCAACGCTTGATTCAAACTCTGACCGATAAACTGAATAGCGTAACGCGTGAATCTCTTACTGGAATTCGTGTGGTGCGTG
CCTATAACGCCGAAAGTTATCAAGAGGATAAATTTGAAAAGGCCAATACTGATTTGACCCAAAACAATCTCTTTATCGGT
CGTTCTTTGGCCTTACTGACACCGGTAATGACTGCTGTATCAAGTGGTTTGACACTGGCTATTTATTGGATTGGTGCACA
TTTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTTCTGGTGCTATGGAAAATAAGGTCCATCTCTTCTCAG
ACATGGTGGTTTATTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTATTGTTTTCTTCCTTCTTCCA
CGTGCAGTTGTAGCAGCTGGTCGTATCAATGAAGTTCTAGATACCCAATCTTCAGTCTCTTATCCTGAAAATAGTTCTGA
AAAGTCTAATGAAGTGGGTACTGTCGAATTTGATGATGTTTCCTTCCGTTATTCTGAGACTTCAGAGCCTGTTTTGGAGC
ATGTGAGCTTCAAAGCTAAAAAAGGTGATACGGTTGCCTTTATTGGTTCGACTGGATCTGGTAAATCAACACTTGTCAAC
CTTATCCCACGTTTTTATGATGCCACGCAAGGAACAATCAAGGTTGACGGAGTAGATGTACGCCATTATGACCACGAAAC
CTTGCACAATATAGTCGGTTATATTCCACAGAAGGCAGTGCTTTTCTCAGGTGATATCACGTCAAATATGACGATGGGAA
CGAGCAATAACAATCCTCTTGATGATGCTAAGATTTGGGAAGCCCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAAGCAGAAGTTGCCCAAGCTGGGTCTAACTTCTCAGGTGGACAGAAACAACGTTTGGCTATTGC
GCGTGCTTTGGCACGTAAGCCTGAAATCTTGATTTTCGATGATTCCTTCTCAGCCTTGGACTATAAGACCGATCGTAAGT
TACGTCAAGAATTGGCTGAAAAAACACAAGATATGACCAAGTTGATTGTAGCTCAACGTATCTCTACTATTATGGATGCG
GACCAAATCTTGGTACTTAATCAAGGTAAGGTCGTTGGTCAAGGAACTCACAAGGAACTTTTGGCAAATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-271)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68.099

100

0.682

Multiple sequence alignment