Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FHI56_RS10060 Genome accession   NZ_CP040804
Coordinates   1944829..1946607 (-) Length   592 a.a.
NCBI ID   WP_045769269.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1939829..1951607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS10030 (FHI56_10030) frr 1939865..1940422 (-) 558 WP_002886708.1 ribosome recycling factor -
  FHI56_RS10035 (FHI56_10035) pyrH 1940437..1941174 (-) 738 WP_002885551.1 UMP kinase -
  FHI56_RS10040 (FHI56_10040) - 1941412..1942635 (-) 1224 WP_045769266.1 HAMP domain-containing sensor histidine kinase -
  FHI56_RS10045 (FHI56_10045) - 1942649..1943326 (-) 678 WP_038675394.1 response regulator transcription factor -
  FHI56_RS10050 (FHI56_10050) - 1943328..1943950 (-) 623 Protein_1748 GTP pyrophosphokinase family protein -
  FHI56_RS10055 (FHI56_10055) - 1944098..1944721 (-) 624 WP_045769268.1 GNAT family N-acetyltransferase -
  FHI56_RS10060 (FHI56_10060) rcrQ 1944829..1946607 (-) 1779 WP_045769269.1 ABC transporter ATP-binding protein Regulator
  FHI56_RS10065 (FHI56_10065) rcrP 1946597..1948411 (-) 1815 WP_045769270.1 ABC transporter ATP-binding protein Regulator
  FHI56_RS10070 (FHI56_10070) rcrR 1948415..1948858 (-) 444 WP_002885568.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  FHI56_RS10075 (FHI56_10075) - 1949044..1949454 (-) 411 WP_014633541.1 peptide deformylase -
  FHI56_RS10080 (FHI56_10080) - 1949612..1950946 (-) 1335 WP_235289496.1 YfhO family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65115.09 Da        Isoelectric Point: 5.1069

>NTDB_id=367373 FHI56_RS10060 WP_045769269.1 1944829..1946607(-) (rcrQ) [Streptococcus salivarius strain LAB813]
MENKPKTSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNAAQESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDNESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=367373 FHI56_RS10060 WP_045769269.1 1944829..1946607(-) (rcrQ) [Streptococcus salivarius strain LAB813]
ATGGAAAATAAGCCAAAAACATCATCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCGGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGGATTACACCTACTAAAATGGGAACGATTCCAGGCATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCCATTTCAGCCATTGTGGGTTACCTACAAAGCTTTACGGTTGCGACAGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTCCCTCTTAATTATTTCGATAGTCACTCTCAAGGGGATACCCTCT
CTCGTGTGACCAATGACGTTGACCTTTTGGGACAATCGCTTAGCCAAGGGTTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTGGCAGCCATTATTATGATGTTCTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCAGTCTTGATAGGGTT
TGTTCTAGTAGCCTTCATCATGGGCTTCTCACAACCCCTTTTCAAACGCCAACAAGAAAATTTGGCTAATATTAATGGTT
ATATTGAAGAAATCTACACAGGTCAAGCAGTCGTAACGAGTTACAATGCTGCTCAAGAGAGCAGTCAAGCTTTCAAGGGA
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTATGTTATGGTCTGTCTTGTGGGTGCCATCAAAGTTATTGATGGTAGCTTGACGATTGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTCTCCCAACCTCTTTCTCAAATTGCCCAAGGGATTACACAACTCCAATCAGCCACT
GCAGCCATTGGCCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACAACGAGTCAGCTAAGACAGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGACTTTTCAGCTC
TTGCTAAACCAGGTCAAAAGATTGCGATTGTTGGTCCAACGGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATCACCATTGACGGTGTGGATACTAACGACATGAAACGTGAAACTGTTCATGATCA
ATTCTCTATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGATGAGCAAGTTATTGCTGCAGCTAAGGCTGTCGGTGTTCACCACTTCATCACCACACTTCCAAAGGGGTATGATACT
TATTTGGATGATTCTGTGACCTTATCAGTTGGTCAGAAACAGCTCTTGACCATTGCGCGTGCGCTTCTTAAGGACGCCCC
TCTTCTTATCTTGGATGAAGCGACATCATCAGTTGACACCCGAACAGAAGAATTGATTCAAAAAGCCATGGACAAGCTTA
TGGAAGGTCGGACTTCCTTTGTCATTGCTCACCGCTTATCAACCATTCGAAATGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGCAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.919

100

0.689

Multiple sequence alignment