Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   GSF71_RS08855 Genome accession   NZ_CP048116
Coordinates   1770465..1772507 (+) Length   680 a.a.
NCBI ID   WP_231953409.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MBEL1397     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1765465..1777507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS08830 rpe 1765784..1766446 (+) 663 WP_076647402.1 ribulose-phosphate 3-epimerase -
  GSF71_RS08835 - 1766433..1767083 (+) 651 WP_162100953.1 thiamine diphosphokinase -
  GSF71_RS08840 rpmB 1767433..1767618 (-) 186 WP_004265581.1 50S ribosomal protein L28 -
  GSF71_RS08845 - 1767921..1768283 (+) 363 WP_016264868.1 Asp23/Gls24 family envelope stress response protein -
  GSF71_RS08850 - 1768347..1770017 (+) 1671 WP_085391690.1 DAK2 domain-containing protein -
  GSF71_RS08855 recG/mmsA 1770465..1772507 (+) 2043 WP_231953409.1 ATP-dependent DNA helicase RecG Machinery gene
  GSF71_RS08860 plsX 1772527..1773540 (+) 1014 WP_016264871.1 phosphate acyltransferase PlsX -
  GSF71_RS08865 acpP 1773687..1773929 (+) 243 WP_011374409.1 acyl carrier protein -
  GSF71_RS08870 - 1774401..1776047 (+) 1647 WP_141265912.1 peptide ABC transporter substrate-binding protein -
  GSF71_RS08875 opp3b 1776117..1777052 (+) 936 WP_141265913.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75826.29 Da        Isoelectric Point: 7.1154

>NTDB_id=367290 GSF71_RS08855 WP_231953409.1 1770465..1772507(+) (recG/mmsA) [Latilactobacillus sakei strain MBEL1397]
MLSLTDSVTVLTGVGPKRLTALNQLGIATISDLLYYFPFRYEDLKVKDLSEAVDQEKVTLKGTVVADPVVSRWGPGKTRL
NVRLLINHDVIMVTFFNQPYLKDKFEAGVDIAVYGKWDARRNSLTGMKVLAVQSADNPSFAAIYSTNKNVRQGTLVKLIR
EAFDNYRNVIPDLIPADIRERYKLVSEVELIAGMHFPESYPEAKQARRTAIFHEFFLYQLQLQAIKQADRHVENGLALPY
QNAALKEFIKTLPFDLTDAQKRVVNEICLDLKAPAHMNRLLQGDVGSGKTIVAAIAMFAAVTAGFQAALMVPTEILAEQH
YQSLQKLYAPMNVTVGLLTGSTTAKERRTLLADIESGRINIIVGTHALIQDAVVYHKLGFAVIDEQHRFGVNQRRVLREK
GLQPDMLAMTATPIPRTLAITAYGEMDVSTIDELPKGRIPIETSWVRSNQVEQALSFVQKQLADNSQVFAITPLIAESEQ
MDLKNAEEIYATLADRFEPQYHVALLHGKLKDDEKNRIMTAFSNNEIQLLVSTTVVEVGVDVPNATVMMIFDADRFGLAQ
LHQLRGRVGRGKKKAYCLLIADPKNQQGVDRMTIMTETTNGFVVAQKDLELRGPGEVFGDRQSGLPVFKVGDPVADFASL
QVAQQEVQKIFTVDPTFSQPAYAPLKAYLAQQKQNYQTLD

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=367290 GSF71_RS08855 WP_231953409.1 1770465..1772507(+) (recG/mmsA) [Latilactobacillus sakei strain MBEL1397]
GTGTTAAGTTTAACGGATTCTGTGACTGTTTTAACGGGTGTTGGCCCGAAGCGTTTGACAGCCCTCAATCAATTAGGAAT
CGCAACAATCAGTGATCTATTGTATTATTTTCCGTTTCGTTACGAGGATTTAAAGGTTAAGGATCTCTCAGAAGCGGTCG
ATCAGGAAAAGGTCACCTTAAAAGGAACCGTTGTCGCTGATCCAGTCGTCAGTCGTTGGGGACCGGGTAAGACACGGCTA
AACGTCCGGTTATTGATTAATCATGATGTCATTATGGTGACTTTTTTCAATCAACCCTACTTGAAGGATAAATTTGAAGC
AGGCGTTGATATTGCTGTTTATGGTAAATGGGATGCTAGACGGAATAGTTTAACCGGGATGAAGGTTTTAGCGGTTCAAT
CGGCTGATAATCCTTCGTTCGCGGCGATTTATTCAACCAATAAAAACGTGCGTCAAGGCACACTCGTAAAATTGATTCGC
GAAGCGTTTGATAATTATCGCAATGTCATTCCGGATTTGATTCCGGCCGATATTCGCGAGCGGTATAAGTTAGTTTCTGA
AGTGGAACTGATTGCTGGAATGCATTTTCCGGAAAGCTACCCAGAAGCCAAGCAGGCGCGACGCACCGCCATTTTTCATG
AATTCTTCTTGTACCAACTGCAATTGCAGGCGATTAAACAAGCAGACCGCCATGTTGAAAATGGCTTAGCACTGCCTTAT
CAAAACGCAGCCCTCAAGGAATTTATTAAGACATTACCGTTTGATTTAACGGATGCTCAAAAGCGGGTGGTCAACGAAAT
TTGTTTAGACCTTAAGGCACCGGCACATATGAACCGTCTTTTACAAGGGGATGTTGGGTCTGGGAAGACGATTGTCGCGG
CGATTGCGATGTTTGCTGCGGTGACGGCCGGTTTCCAAGCGGCCTTAATGGTGCCCACCGAAATTTTGGCGGAACAACAT
TATCAGAGCCTACAAAAGCTTTATGCACCAATGAATGTGACGGTTGGGTTACTAACTGGTTCGACAACCGCCAAGGAGCG
CCGGACGTTGTTGGCGGATATTGAATCCGGTCGGATCAATATCATTGTCGGAACGCACGCACTTATTCAAGATGCCGTGG
TTTACCACAAGTTAGGCTTTGCCGTCATCGATGAACAACATCGATTTGGGGTCAATCAACGGCGCGTGCTACGTGAAAAA
GGCTTGCAGCCTGATATGCTGGCAATGACAGCGACACCGATTCCGCGGACCTTGGCAATTACCGCCTATGGCGAAATGGA
TGTTTCGACCATCGATGAGTTACCTAAAGGTCGGATTCCAATTGAAACCAGTTGGGTGCGTAGTAACCAGGTTGAACAAG
CGCTCTCGTTTGTTCAAAAACAATTGGCTGACAACTCGCAAGTTTTTGCGATTACGCCGTTAATTGCGGAGTCGGAACAA
ATGGATCTCAAAAATGCGGAAGAAATCTACGCGACTTTGGCGGATCGGTTTGAGCCGCAGTACCATGTGGCGCTATTACA
CGGTAAGTTGAAGGATGACGAGAAAAACCGGATTATGACGGCTTTTTCAAATAACGAGATTCAACTACTGGTTTCAACGA
CCGTCGTTGAAGTCGGGGTCGATGTGCCTAATGCGACCGTGATGATGATTTTCGATGCTGACCGGTTTGGCTTAGCCCAA
CTTCATCAATTGCGTGGCCGGGTTGGTCGGGGCAAGAAAAAGGCCTACTGTCTATTGATTGCCGATCCTAAGAATCAACA
AGGTGTAGATCGAATGACGATCATGACCGAAACGACCAACGGTTTTGTTGTTGCGCAAAAAGATTTGGAATTACGAGGCC
CTGGTGAGGTCTTTGGCGATCGGCAATCGGGATTACCAGTCTTCAAGGTTGGTGATCCAGTCGCTGATTTTGCCAGCTTA
CAGGTCGCACAACAAGAAGTACAAAAAATCTTCACGGTTGATCCTACTTTTAGCCAACCGGCGTACGCGCCTTTAAAAGC
GTATCTCGCACAACAAAAACAAAACTATCAAACATTAGATTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(12-162)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(598-671)

Helicase conserved C-terminal domain (Helicase_C)

(463-571)

DEAD/DEAH box helicase (DEAD)

(257-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

51.335

99.118

0.509
  recG/mmsA Streptococcus pneumoniae R36A

51.335

99.118

0.509
  recG Bacillus subtilis subsp. subtilis str. 168

49.321

97.5

0.481