Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GSF71_RS06980 Genome accession   NZ_CP048116
Coordinates   1426314..1426910 (+) Length   198 a.a.
NCBI ID   WP_011374047.1    Uniprot ID   Q38YT8
Organism   Latilactobacillus sakei strain MBEL1397     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1421314..1431910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS06950 - 1422192..1422797 (+) 606 WP_085391630.1 class I SAM-dependent methyltransferase -
  GSF71_RS06955 - 1422870..1423214 (+) 345 WP_016264616.1 hypothetical protein -
  GSF71_RS06960 tadA 1423328..1423813 (+) 486 WP_052039285.1 tRNA adenosine(34) deaminase TadA -
  GSF71_RS06970 dnaX 1424238..1425953 (+) 1716 WP_035147295.1 DNA polymerase III subunit gamma/tau -
  GSF71_RS06975 - 1425980..1426288 (+) 309 WP_016264619.1 YbaB/EbfC family nucleoid-associated protein -
  GSF71_RS06980 recR 1426314..1426910 (+) 597 WP_011374047.1 recombination mediator RecR Machinery gene
  GSF71_RS06985 - 1426927..1427181 (+) 255 WP_011374048.1 YaaL family protein -
  GSF71_RS06990 tmk 1427324..1427968 (+) 645 WP_016264620.1 dTMP kinase -
  GSF71_RS06995 - 1427983..1428312 (+) 330 WP_011374050.1 cyclic-di-AMP receptor -
  GSF71_RS07000 holB 1428316..1429308 (+) 993 WP_035147293.1 DNA polymerase III subunit delta' -
  GSF71_RS07005 - 1429360..1429713 (+) 354 WP_011374052.1 DNA replication initiation control protein YabA -
  GSF71_RS07010 rsmI 1429812..1430690 (+) 879 WP_011374053.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GSF71_RS07015 - 1430701..1431447 (+) 747 WP_035147289.1 acyl-[acyl-carrier-protein] thioesterase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22051.38 Da        Isoelectric Point: 5.1115

>NTDB_id=367273 GSF71_RS06980 WP_011374047.1 1426314..1426910(+) (recR) [Latilactobacillus sakei strain MBEL1397]
MQYPEPIAKLIESYMKLPGIGNKTATRLAFYTIDMNEDDVTNFAKNLISARRDLHYCSVCGNITDEDPCEICRDTARSQE
MILVVEQPKDVMSMERMNDYHGLYHVLHGVLSPIEGKGPDDINIANLIKRLQKTPAKEVIIATNATPEGEATAMYISRLI
KPAGIKVTRLAHGLAVGSDIEYADEMTLLKAVEGRQEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=367273 GSF71_RS06980 WP_011374047.1 1426314..1426910(+) (recR) [Latilactobacillus sakei strain MBEL1397]
ATGCAATATCCAGAACCAATTGCGAAGCTAATCGAAAGTTATATGAAGTTACCAGGCATTGGTAACAAAACAGCAACGCG
ATTAGCTTTTTATACGATTGATATGAATGAAGATGACGTGACTAACTTTGCCAAGAATCTGATTTCAGCACGCCGAGACC
TCCATTATTGTAGTGTCTGTGGCAATATCACTGATGAAGATCCTTGTGAGATTTGTCGGGATACCGCGCGTAGTCAGGAA
ATGATTTTGGTGGTCGAACAACCTAAAGATGTGATGTCGATGGAACGGATGAACGATTATCACGGTCTCTATCACGTCTT
GCACGGGGTGTTGTCACCAATTGAAGGTAAAGGGCCAGACGATATTAATATTGCTAATTTAATTAAACGACTCCAAAAAA
CACCAGCTAAAGAAGTCATCATCGCCACCAATGCAACGCCCGAAGGGGAAGCAACGGCGATGTATATTTCACGGCTAATT
AAGCCGGCCGGGATTAAAGTCACTCGCTTAGCCCATGGTTTAGCGGTCGGGAGCGATATTGAATATGCGGATGAGATGAC
TTTATTAAAAGCAGTCGAGGGTCGTCAAGAAATCTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

66.667

100

0.667
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.98

100

0.48

Multiple sequence alignment