Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   GSF71_RS05185 Genome accession   NZ_CP048116
Coordinates   1042728..1043855 (+) Length   375 a.a.
NCBI ID   WP_016264313.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MBEL1397     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037728..1048855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS05160 rnpA 1038448..1038810 (-) 363 WP_011375565.1 ribonuclease P protein component -
  GSF71_RS05165 rpmH 1038876..1039016 (-) 141 WP_004265830.1 50S ribosomal protein L34 -
  GSF71_RS05170 dnaA 1039588..1040934 (+) 1347 WP_011373719.1 chromosomal replication initiator protein DnaA -
  GSF71_RS05175 dnaN 1041112..1042251 (+) 1140 WP_016264311.1 DNA polymerase III subunit beta -
  GSF71_RS05180 yaaA 1042494..1042721 (+) 228 WP_016264312.1 S4 domain-containing protein YaaA -
  GSF71_RS05185 recF 1042728..1043855 (+) 1128 WP_016264313.1 DNA replication/repair protein RecF Machinery gene
  GSF71_RS05190 gyrB 1043877..1045868 (+) 1992 WP_049762101.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  GSF71_RS05195 gyrA 1045916..1048489 (+) 2574 WP_016264314.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43222.06 Da        Isoelectric Point: 6.5993

>NTDB_id=367259 GSF71_RS05185 WP_016264313.1 1042728..1043855(+) (recF) [Latilactobacillus sakei strain MBEL1397]
MYLSELQLNHYRNYESVDVHFSPDTNVLIGENAQGKTNLLEAIYVLALARSHRTNTDRELIQWHEDFAKITGLVQRSAGK
TPLELVLSQKGKKAKVNHLEQAKLSQYIGQLNVVLFAPEDLNIVKGSPAVRRHFIDMEFGQMSSKYLYNISQYKSILKQR
NQYLKQLQRRQAKDLVYLGVLSDQLAAYGAEVTVARRQFLQQMEKWAQKLHQEITKDREVLTFKYQSQIPEEQLDQSVEE
LYQQFQTLYEKQQTREVEQGTTLIGPHRDDVQFLVNDKDVQAFGSQGQQRTTALSVKLAEIDLMKAQTGEYPILLLDDVL
SELDDLRQTHLLKTFQNKVQTFLTTTSLENVKKEIIATPRVFTVTNGVVTEEQAE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=367259 GSF71_RS05185 WP_016264313.1 1042728..1043855(+) (recF) [Latilactobacillus sakei strain MBEL1397]
ATGTATCTAAGCGAACTACAACTGAATCATTATCGTAATTATGAGTCAGTTGATGTGCACTTTTCACCAGATACGAACGT
CTTGATTGGTGAAAATGCGCAGGGGAAAACGAACTTACTAGAAGCAATCTACGTTTTAGCCTTGGCCCGCTCACATCGCA
CGAATACCGATCGCGAATTAATTCAATGGCATGAAGACTTCGCTAAAATTACCGGTTTGGTCCAACGTTCTGCAGGGAAA
ACCCCGTTAGAGCTCGTTTTAAGCCAAAAAGGTAAAAAGGCGAAGGTCAATCATTTAGAACAGGCCAAGTTATCACAATA
TATTGGTCAGCTAAACGTCGTGTTATTTGCGCCGGAGGATTTAAACATCGTTAAGGGTTCGCCCGCTGTGAGACGTCATT
TCATTGATATGGAATTCGGGCAGATGAGTAGCAAGTATCTCTATAATATTTCGCAATACAAATCAATTCTGAAACAACGT
AATCAATATCTTAAGCAACTCCAACGGCGCCAAGCCAAGGATCTTGTTTATTTAGGTGTTTTATCGGATCAATTAGCGGC
TTACGGGGCGGAAGTGACCGTCGCCCGTCGCCAGTTTCTCCAACAAATGGAAAAATGGGCCCAAAAATTGCATCAGGAGA
TTACGAAGGATCGGGAAGTCTTGACGTTTAAATATCAAAGTCAAATTCCAGAAGAACAATTAGATCAAAGTGTCGAAGAA
CTCTATCAACAATTTCAAACCTTGTATGAGAAACAACAAACCCGTGAGGTTGAACAAGGCACGACGTTGATTGGTCCCCA
CCGCGATGATGTTCAATTTTTAGTCAACGATAAGGATGTGCAGGCCTTTGGTTCCCAAGGGCAACAACGGACAACCGCGT
TGAGTGTCAAATTGGCCGAAATTGACTTGATGAAGGCCCAAACCGGGGAATACCCGATTTTATTACTGGACGATGTGTTG
TCGGAATTAGACGATTTACGCCAAACACATTTGTTGAAGACGTTCCAAAACAAAGTCCAAACATTCCTCACAACAACCAG
TTTAGAGAATGTTAAAAAAGAAATTATTGCGACGCCGCGCGTGTTTACAGTCACCAACGGGGTCGTCACAGAAGAACAAG
CAGAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-368)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

56.183

99.2

0.557
  recF Streptococcus pneumoniae R6

48.509

98.4

0.477